barSeed - Barley Seed Development Database

Probe CUST_41363_PI390587928

Source Contig U35_7057

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41363_PI390587928	Hv_44K_v2	TACTACGGAGTATATATGTGAACAAGTGAACCTATACAAAACCAAGACAGTGGTATAATC	1014	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.031	0.775	0.877	0.688	1.397	1.142
Raw	4.019	3.040	5.783	6.188	4.849	2.923

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11956.1	903	2e-24	245 - 304	100	60 / 60	minus	ABC15595
JLOC1	JLOC1_7979.1	677	8e-25	17 - 76	100	60 / 60	minus
Harvest21	ABC15595	1092	3e-25	1015 - 1074	100	60 / 60	plus	ABC15595
Harvest35	U35_7057	1092	3e-25	1015 - 1074	100	60 / 60	plus

Contig Sequence (1092 bp)

>U35_7057 1092 Hv_44K_v2
GGTTTCCCTTTCACTTTGCTGGCCAGCTGCTCCATCACATTACAAGTCATTCTCGCCACC
GTGCTTTCCTTTTGCTTGGAGTGAAATTAAGATGAGCAGCGCCGGCGGCGGCATGGTGGC
GCCGTTCGTGGCCAAGACGTACGGCATGGTGGACGACCCGGCGACGGACGCCGTGGTCGC
GTGGGGGCCGGCCAGCAACAGCTTCGTCGTCGCCGACCCCTTCGCCTTCTCGGAGATGCT
GCTGCCGGCGCACTTCAAGCACGCCAACTTCTCCAGCTTCGTCCGGCAGCTCAACACCTA
CGGCTTCCGCAAGGTCGACCCGGACCGCTGGGAGTTCGCGCACTCCTCCTTCCTCCGCGG
CCAGACGCACCTCCTCCCCCGCATCGTGCGCCGCCGCCAGAGCGGCGGCGCCAGGCGTCC
TTCCAAGGACGACCACGCGGAGGATGAAGACAGCAGCAGCGCCATGTTGGCCATGGAGGT
GATGCGGCTCAAGGAGGAGCAGAGGGCCACCGAGGAGCGCGTGGCGGCGATGTGGCGCCG
GGTGCAGGACGCCGAGCGCCGGCCCAAGCTGATGCTCGCCTTCCTCCTCAAGGTCGTCGG
AGACCCCGACGTGCTGCGCCGCCTCATGGGCAGCTCGAGCAGCGACGCCGGATTATTCCC
GGGCGACGGCGCGGAGCCCAAGAGGCCGCGTCTGCTTCTCGACGGGGAAGTCCATGTGGG
AAAGAAGATGCGCGTCGACGGCGACGGGATGTTGTACGGCACCGACCGGCAGGATGTCTT
CGTGCGGGAACCAGGGGCCGACTTCGCTGGGTTCTACACCGGAGGCGACGGGTTCAGCGA
CGTGCCGGTGGACGACCCGCCGTACGTTTTCCCAGTGGACAGCGGCTACTGAGTTCGATC
AGCTCGTGTTTTTATCTCCGGCTGTTCGCCGACACGTTTGGGTAGGGTACTTATGTAGTA
GGATTTTCTTTTTCTTTTTTGAGACGAAGTGGTAGGAGTAGTTTTGTGGCAAACTACTAC
GGAGTATATATGTGAACAAGTGAACCTATACAAAACCAAGACAGTGGTATAATCCAAAAA
AAAAAAAAAAAA

Homology of Contig U35_7057 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g13800.1	299	2e-89	protein\|HSF-type DNA-binding domain containing protein, expressed
Brachypodium v1_2	Bradi3g08870.1	315	3e-95
Arabidopsis v10	AT3G24520.1	330	9e-58	\| Symbols: AT-HSFC1, HSFC1 \| heat shock transcription factor C1 \| chr3:8941455-8942531 FORWARD LENGTH=330