barSeed - Barley Seed Development Database

Probe CUST_41358_PI390587928

Source Contig U35_7063

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41358_PI390587928	Hv_44K_v2	GTGGATCAGGTGTAAATAGAAATGTTCAATGTCGATCTATGATCAGAGTTAAATGCTAGA	979	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59370.6	602	2e-24	56 - 115	100	60 / 60	minus	ABC16764
JLOC1	JLOC1_38635.1	662	8e-25	493 - 552	100	60 / 60	plus
Harvest21	ABC16764	742	3e-25	35 - 94	100	60 / 60	minus	ABC16764
Harvest35	U35_7063	1073	3e-25	980 - 1039	100	60 / 60	plus

Contig Sequence (1073 bp)

>U35_7063 1073 Hv_44K_v2
GGCGAATTGGGCCCTTTCCAGCATGCTCGAGCGGCCGCTAATATTCCGCAAGCAAGAGAT
GGTAGAACTGATTCAGAATCAGACTCAAGTAGCAATAAGCAGGCGTTTTCAAACAATGTC
ACACAAGCTAGCAATATTCATGTGGCTGAAACTTCTTTTGCGGAGGAGGGAAGAATTGAA
ACTGAGGATAACACTGAAGCCTTCAAACAGGTTAGAGGACAAGAATGTGACAGCAGTGAT
AATAAATCCCATTCAGATACTCGAATGACCAGAGGTAAAGATCCTTTTGCTCTGTCTATC
CTGAAGCAAGTGGAACATAAGTTACATGGACGAGATATAGATGGTACCAGGTCCTTGAAA
ATTTCGGAGCAAGTAGACTATCTTCTTAAGCAGGCGACAAGCATCGATAATTTGTGTAAT
ATGTACGAGGGTTGGACACCTTGGATATGATTCAAATTTCACCGCTACAACTTCCATTAA
TGTATGCTGTCCAGAGTTTCAGGCAAAAGACATTCCATGGCAAAAGCAGGATAGCATGTC
AAGCAATTGTATGGTTGCTATGAATGACGTCGAGCCAAGTTAAAGATCTACAGGTTTCAT
TTATAAGACAGTGCGGCTCGACTTCTCCGCAGCGTGTGGCATGGACGGCTACGGATGGCT
CTCCGAGCAGAGGAGGTGCACCACGTTGGTACTGTTGGCCTCTGTATCTACAATGTTACA
TTGCCATTCACATACATTGTGGAATGCTGAAGCTTGGCATGGTATGATCGAAAATACCTC
AAGCATGCACGATTTGCATGGACACGCGGTGCGCTCACCCACGGGGATTCAAAATTGGTA
AAGCTGTAAAATGTAAATAGTCATTCCCTGTACATATCGATATTTTGGAAGCTCCTTTCC
ATGATCCAAGTAGCATACTGGAAAGCGTAGGCGTTGGATATGCAATTGTGGAAATGCCGT
TCAAATTCTGCAATTCCTTGTGGATCAGGTGTAAATAGAAATGTTCAATGTCGATCTATG
ATCAGAGTTAAATGCTAGATTATTCGACATGCTAGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_7063 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g52830.1	288	4e-55	protein\|FATC domain containing protein, expressed
Brachypodium v1_2	Bradi1g09310.1	3630	9e-63
Arabidopsis v10	None