barSeed - Barley Seed Development Database

Probe CUST_41352_PI390587928

Source Contig U35_7069

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41352_PI390587928	Hv_44K_v2	AAGCTTGGAACAGTCCCTGTAATTGTTCCAACTCTATTGATGTTTGGCAATTTGAATTAA	632	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38004.1	2789	7e-23	2048 - 2107	98	59 / 60	plus	ABC16141
MLOC	MLOC_38004.2	2009	7e-23	1893 - 1952	98	59 / 60	plus	ABC16141
JLOC1	JLOC1_24669.1	2271	4e-23	2051 - 2110	98	59 / 60	plus
Harvest21	ABC16141	725	3e-25	34 - 93	100	60 / 60	minus	ABC16141
Harvest35	U35_7069	725	3e-25	633 - 692	100	60 / 60	plus

Contig Sequence (725 bp)

>U35_7069 725 Hv_44K_v2
AGGTTAGCAAAGTACGTTTCAAGCCCATAAGCAGTGAATGTGTAGACGTTGACAACAAGG
GTGTGAACCGGCTGATGTCAAAAAAGATTATCAAGCGGAAGAAGAAGAACTCTGGTAATT
CTTCCGACAGCGATGATGACGACGAGTGTCCTGATATAACAGAAAATGGTTGCCCTGTGG
AGCCGGTTTCATACTCAGATGATAGTGCGGAGCTAGAAGATGCTGGCAGTTCTGTGGGGA
CAAGGTAACAAAGTAAGCAATTAGCACCATTGTGCTACTGCCAATAACCAACCTCCTGCC
CCTTGTTGCATCATACAACCGAAGAAGAGAAAAGAGGAGAAACATAGTAGGCGACGTAAA
ACAGCGGCAGTAAGCATTGACTGCTCTCGTGTTGAGTTGGGTGGAGTTTTTGTTTGTCTC
GCTACTTTGGTCTGCTTGATGTGTGCGTGTGTGAGGCTTTAGTGGTGGTAGTGGAGAAGA
GCATTGTGCGTACTTGTAAGCAGCAAGTTTGGTCGTGGTGCAGCTCTTAAACAAAAAAAG
TCAATTCCTGGATCCGCCATCGTATATGGGGGCCGTCCATGAGGAGACCAATAATCTAGT
TTCCATGAATCCTAAGTAATAATCTAGATAGGAAGCTTGGAACAGTCCCTGTAATTGTTC
CAACTCTATTGATGTTTGGCAATTTGAATTAAGAAAATTTAAGAAACCAAAAAAAAAAAA
AAAAA

Homology of Contig U35_7069 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None