barSeed - Barley Seed Development Database

Probe CUST_41350_PI390587928

Source Contig U35_7071

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41350_PI390587928	Hv_44K_v2	AGAGGCAGCCCAGAATGCCATCACTGATCAAACTAAATGAAATAAAAGGAGAATTTTTTC	807	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.281	1.480	1.172	1.067	0.448	0.446
Raw	748.274	1343.660	932.361	1313.657	198.598	210.786

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_35881.1	1538	9e-22	12 - 66	100	55 / 55	minus	ABC15344
JLOC1	JLOC1_23120.1	1360	5e-22	1239 - 1293	100	55 / 55	plus
Harvest21	ABC15344	891	6e-22	28 - 84	98	56 / 57	minus	ABC15344
Harvest35	U35_7071	884	3e-25	808 - 867	100	60 / 60	plus

Contig Sequence (884 bp)

>U35_7071 884 Hv_44K_v2
TGCTATAGGGAACTTCACTTACTTGATGCTGCCACAGTTTGAGCCTCTTGTTCCTGGGCA
CTGTGTCATTCTTCCATTGCAGCACGAGTCTTCAACAAGAACAGTTGATAAAAATGTCTG
GGAGGAGATCCGCAACTTCAAGAAGTGCCTCCTGAAGATGTTCGCGCAGCAGGATAAGGA
TGTGGTTTTCATGGAAACTGTCATAAGCCTGGTCAAACAGCAGAGGCATTGCATGATTGA
ATGCATCCCTGTCCCATGCGAAGTTTCAAATAAAGCGCCCATGTACTTCAAGAAGGCAAT
CGACGAAGCTGAGGAGGAATGGTCGCAGCATGAGATGAAGAAGCTCATTCCAACGAGCGG
TAACCTGCGGCAATGCATCCCGGAGAACTTCGCCTACTTCCACGTGGAGTTTGGTCTGGA
CCGCGGGTTCGTCCACGTGATAGACGATGAGAGCAAGTTCGGTGCTGGTTTCGGGCTGAA
TGTACTCCGAGGGGTGCTCCGGTTGCCAGGGGAGGACATGCACCGTCGCCGGAGGCACGA
GTCCATGGATAACCAGAAGCAAGCCGTTGCTGGCTTCATGAAGGACTGGGAGCCCTTCGA
CTGGACGAAGCAGCTCGAGTAGATGTAAATACGATCTTAAGAGCACTTGGGAAGACTCAC
GCAATTTGCACCAGACAGTTTTGTAGGGAAGAAATTGTACTGATGTTGTTATGTATCTGT
GTTTTAAATGCTTCCTTGGTTGAATTTAACATCTGACAGGATATGGCTATGAACTTCAGT
TCAAGTGTATCTTGAAGCGACGACATTAGAGGCAGCCCAGAATGCCATCACTGATCAAAC
TAAATGAAATAAAAGGAGAATTTTTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_7071 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g52980.1	760	5e-129	protein\|CWF19-like 2, cell cycle control, putative, expressed
Brachypodium v1_2	Bradi1g09200.1	752	2e-139
Arabidopsis v10	AT1G56290.1	692	5e-98	CwfJ-like family protein \| chr1:21075939-21078608 FORWARD LENGTH=692