barSeed - Barley Seed Development Database

Probe CUST_41346_PI390587928

Source Contig U35_7075

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41346_PI390587928	Hv_44K_v2	GCTGGACATTGTGAGTTGTTCCTACGCAAACCAAACATGGTGTGCGTTTCCGTCAAAAAA	725	GeneList: midnightblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.189	0.352	0.553	1.626	1.889	3.063
Raw	944.170	2745.295	3724.293	17100.873	6790.323	12232.627

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60223.2	1158	3e-21	741 - 794	100	54 / 54	plus	ABC14576
MLOC	MLOC_60223.1	1476	3e-21	438 - 491	100	54 / 54	minus	ABC14576
JLOC1	JLOC1_39250.2	1295	2e-21	825 - 878	100	54 / 54	plus
JLOC1	JLOC1_39250.1	1202	2e-21	732 - 785	100	54 / 54	plus
Harvest21	ABC14576	796	3e-25	726 - 785	100	60 / 60	plus	ABC14576
Harvest35	U35_7075	796	3e-25	726 - 785	100	60 / 60	plus

Contig Sequence (796 bp)

>U35_7075 796 Hv_44K_v2
GCCAAGCAATATCTGTCTGCCCGCTGGATTCACACGCGCGTGCGCGCAAGAGTAGGAGAG
AGGTATATAGAGAGAGAAAAGAGAGGTGTTTGTGGTTGGGTGGCGCTTGGCAATGTGATG
GCGCAGCCGCGGCAGCAGCAACGACAACGGCGCCTCGTCGCGGCGCTCCTGGTGCTCCTC
TCCCTGTGCTGCCTTGCTCGCCTCGGCGCCGCGGCTTCTGCGGCGAGTGCTGACCCTGAC
GCTGACGGGAACGATGGAGCGGCGACTGCGCTGGACAAGGCCGCGGAACAGGAGGAGGAG
GAGGAGGAGGCAGCGCGCGGGTGGACGGCGACCACCGTGGAGGAGCAAGGGCGAGGGCGA
GGACCGGTGAGGGTGGTGACGGAGGTCGACATCGAGGACTATCCCCGGTACGGCGCCAAT
GGCCGGCACAACCCGGAGGGTCCGCACCCGTGACAGCGGCCGCCGCGCCCGCGAGATCAG
ATCACTGCCCGCCGGCCTATCCAGCCAGCTGCTCGTCGCCAGATCTGTTGCTAGTTAAGC
TAAATATTGGTTCGCGCGCACGCCACCATCACCACCACCCGTGCCTAAGCGCACGGCGAG
CTGTCGACGCGGCCGCATGCCGCGCCGTAGGCCCGTAGCTTTGCTTTTCGCTTTCTGAAG
ATGATTTGTCTTCCGCTGCTGCTTCGCTTTTTTTCTTGTTGCTTCCGCTGTTTCGGCCAC
CGGCCGCTGGACATTGTGAGTTGTTCCTACGCAAACCAAACATGGTGTGCGTTTCCGTCA
AAAAAAAAAAAAAAAA

Homology of Contig U35_7075 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None