barSeed - Barley Seed Development Database

Probe CUST_41342_PI390587928

Source Contig U35_7079

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41342_PI390587928	Hv_44K_v2	CTTTGAATAATTAATTAATCTGACTGTAGCAAAGAGAGCAAGCCCTTCTCACGTTGTTGG	1250	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.271	4.365	1.302	0.818	0.322	0.469
Raw	544.132	762.177	187.021	188.328	26.351	41.493

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55747.3	1489	2e-24	1266 - 1325	100	60 / 60	plus	ABC14545 ABC29872
Harvest21	ABC14545	1467	3e-25	1251 - 1310	100	60 / 60	plus	ABC14545
Harvest35	U35_7079	1467	3e-25	1251 - 1310	100	60 / 60	plus

Contig Sequence (1467 bp)

>U35_7079 1467 Hv_44K_v2
GTCCTGCCCTGCCCGTCTATTCTCTCCCACCCCGCCCCCACCCCACCCCCCACCCTGTGT
GCAAGGAAGGCCCAATATTTGAGTACATACTCGTTTGAAGGACAGTGGTGCTGGTTCTTG
CCATCTCGGTGGTGCTCCATTTGCTAAGACTTTATGGGTGACGGCAGAGCAATGGCCCGC
GCTGGATCATTGGTTTCAAAGCTTGAGTCGAAGATATGCTATCACAGGGATGCAACCCTC
GAGTACATGGAAACAAAGGCTGTGGTTAATGAAGTTATAGAAGAAAAGGAGAAGCTCCAG
CATGATTATTATGCACTGAAAGACAAACTTGAGGAGGCAAACAAAATGATTGTGGAAGTA
AACAAGGAGCTTGCAGCATGAAACGAGGAGACCTCTGCAAATAAAAAAGAGCTGGAGCTT
TTAAAGAAGAAGCTTCAAGACTGGGAAGCTAAGAAAAATCAACCTGAGCTATGTGCTTCT
GAGCTTGTCCAAGTTAGTCAGGTGCAGACAAGACCAGTGAGGCAACTGGAAGTGCCATCT
GAAGGACCTCCGGGAAATGATGCCGACATGGTGGAAGGGAGTCATGCGCGCATGCTGGTA
AACAACCTCATTGTTGGCCAAGCCTCAGTTGTTCCATCAAGCAGAGATGATGTCATGGTG
GCCCTGCGTGAACATCTGATCAAGAAATTCCTTGAAATCGATAAATACGGCGGGCGGATG
ATCGGGATAAAGGAAATGGGCAAACTGAATGTGAAGGCATTCGAGATTGCTTGCGCTGAG
AAGATACGTACCACAAAAGTCGCTGATGCATCAAGTAAGCTATACTCACTGTGGCAGAAG
CGGATCACTGACGTGAGCTGGAATCCCTTCAACACGATCACGGTTGAGGGCAATCATCAG
GAGGTTCTCAATGTCAATGATGATAAGCTGCAAGAACTGAAGAAGGAATGGGGAGAAGGC
CCCCACAAAGCTGTCGTCGATGCGCTGATGGAGATGAAAGAGTACAACTGCCTAGGCGAC
AGGAGCATCGTCTATGAGCTATGGAACTACAATGAGGGCAGGAAAGCCACCCTAATGGAG
TGTACGGAGTACATGGGTGATCGTGTGCAAGAACTCACAGTGGTCAAGCGCAGGAAGACT
CGCAGGTAGATTTGATGGCACCTGTAGGATGCACCAGCAAGGAAAGAGGTTGCCATATCC
CCTTGGTGGTTAAAGTAGTACTCCGTAGTAAAAACTGTTATGAGCGTGTGCTTTGAATAA
TTAATTAATCTGACTGTAGCAAAGAGAGCAAGCCCTTCTCACGTTGTTGGACCAATTTCG
ATGTTGTCGGATCAAGCTGTAGCTTATGACTATCTGCAGTTTGTACTGTTCTACCTTGTA
CTTACTCTATCTACCATCTACTACTAGTAATAAATTAGCTGCTACTCTGATATTTGTCAT
TCAGGTATGAAAAGAGAGCAAGTTAAG

Homology of Contig U35_7079 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g38440.2	378	3e-81	protein\|XH domain containing protein, expressed
Brachypodium v1_2	None
Arabidopsis v10	None