barSeed - Barley Seed Development Database

Probe CUST_41341_PI390587928

Source Contig U35_7080

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41341_PI390587928	Hv_44K_v2	AAAGGAGTTCTTGACTCTCTCACGGATACTGACGCAACAACCAGTAACATCCTGAGATTT	1137	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375442	2104	2e-24	1188 - 1247	100	60 / 60	plus	ABC33266 ABC41818
MLOC	MLOC_70691.4	3483	2e-24	1154 - 1213	100	60 / 60	plus	ABC33266 ABC41818
MLOC	MLOC_70691.2	1422	2e-24	1247 - 1306	100	60 / 60	plus	None
MLOC	MLOC_70691.3	2662	2e-24	1154 - 1213	100	60 / 60	plus	ABC33266 ABC41818
JLOC1	JLOC1_46924.2	2303	8e-25	1150 - 1209	100	60 / 60	plus
JLOC1	JLOC1_46924.1	2314	8e-25	1161 - 1220	100	60 / 60	plus
Harvest35	U35_7080	1201	3e-25	1138 - 1197	100	60 / 60	plus

Contig Sequence (1201 bp)

>U35_7080 1201 Hv_44K_v2
CCGCCGCCTCCGTGGCCCCCTTCGAGCCCCCCTCCGCCTCCACTCGACCCTCTCCTCCTC
GTCCGGCGCCACCGCATCTGCGGTATGCCCGCCGGCAGGCACGATCTGCACCTCATCTAG
GGCTTCTGAGTTTCGAGTGCCCCTGGTCACCACCCCGTTCTTTGCCACCCTAGCTCGCCA
TCGTCGTCGGACGGCCGGAGCATTCGCTGCCGCCCCAGCTCGCCATCGTCGCCGGACCGT
TCACTGCAAGAGTCTCGGCCGCGACCAGCACGGAGCTCTGCGGCGAACACCAGGACCGGA
TCTCCGCGCCCCCAATTGCAGGTCCGAATCGGGGTTTACTCCAATCTTGGCTCCGCCCCT
GCCAACAGTTCAACTCCCATGGCGGCGGCGGCGCCGGCGCCCGTGGCGGGTCACGCACAT
GCAGTACTGCGTGGCCGGCTCTGCGACCCGGCCTTCGTCCACTCCTGTCTCAGATCCTCG
CCCGACACCAACTACAGTAAGCTCAAGTACCTCGTGGCCAGCTCGGTCTCCGAGGCCTGC
AACAACTCCGTCCTCCTCCTTGGACCCCGCGGCTGCGGCAAAGGAGCGGTGCTCGACATG
GTTCTAGAGGACCTGAGGAAGGAGCATCCTGATGCCATATCCGTGATCAGGCTGAATGGC
ATGTTACATAGCGATGACAACTGCGCTACAAAGGAAATTGCCAGGCAGCTGTGTCTGGAG
CATCAATTGTCATTTTCCAAAATGGCTTCTTCGGATGACAACACTGAATTCATGATTGAC
ATGTTACGAGAGTGTGGACTAGCTCACAAGACAGTAATTTTTGTCCTGGAAGAGTTTGAC
CTCTTTGCTCAGGGGAAGCAGCGGTTACTCTATAGCTTACTTGATGCAATGCAATCTCTT
ACATCACAAGCTGTCGTCATTGGTATGAGTTGTCGATTGGATGCAGATCAACTGCTAGAA
AAAAGAGTTCGATCTCGCTTCTCTCACAGGAAGCTTCTTTTTGTTCCTTCTTCATTAGAT
GATATACAGAGGTTGATGGAACATTTGCTAATGCTAGAGAAAGACTCAAGCTTACCAACA
AACTATGTTACGGAGTACAATTCAAGGCTTACTAGCATTTTCAGCAACAAGAAGTTTAAA
GGAGTTCTTGACTCTCTCACGGATACTGACGCAACAACCAGTAACATCCTGAGATTTCTC
T

Homology of Contig U35_7080 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g49010.2	426	2e-151	protein\|ORC4 - Putative origin recognition complex subunit 4, expressed
Brachypodium v1_2	Bradi2g46720.2	367	2e-156
Arabidopsis v10	AT2G01120.2	424	3e-106	\| Symbols: ORC4 \| origin recognition complex subunit 4 \| chr2:85444-88027 FORWARD LENGTH=424