barSeed - Barley Seed Development Database

Probe CUST_41337_PI390587928

Source Contig U35_7085

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41337_PI390587928	Hv_44K_v2	CGCCAAAATCTGCCCTTGCTAGTTTTCTCTTTCTTAAAGCAAATTCATACCCATAAAAAA	928	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.651	2.104	1.116	0.799	0.383	0.463
Raw	68.467	141.799	63.341	71.030	12.028	15.919

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC36722	687	3e-25	12 - 71	100	60 / 60	minus	ABC36722
Harvest35	U35_7085	999	3e-25	929 - 988	100	60 / 60	plus

Contig Sequence (999 bp)

>U35_7085 999 Hv_44K_v2
GCTGCAGGNGCTTGGTGAAACTGATGGGTCGCTATAGTGGGTTTATTGCAATGTATGCTA
CGCTGGCAAGCAGAGATGTGGACTGCTGCTTGATTCCTGAATCTCCGTTTTATTTGGAGG
GGAAGGGTGGACTTTTCGAGTATATAGAAAGGAGGCTGAAGGAGAACAACCATATGGTCA
TTGTAGTGGCTGAGGGAGCAGGACAGGATCTTATCGCCAAAAGTATACCTGTAGCAGATC
AGCTAGATGCATCTGGAAATAAGCTGCTTCTTGATGTTGGTCTCTGGTTGACTCACAAGA
TTAAGGATTATTGCAAGAGCAAAAAGATGGAGATGACCATTAAATACATAGATCCAACCT
ACATGATCCGAGCCATTCCAAGCAATTCATCGGATAATGTCTACTGCACGCTGCTGGCAC
ACAGTGCCATTCATGGTGCAATGGCAGGATATAGCTTCACAGTGGGAATGGTCCACGGCA
GGCATGCATACATACCATTTCATAGAGTAACATCGACACGGAACAAGGTGAAGATCACGG
ACAGGATGTGGGCAAGGCTGCTGTCTTCGACAAACCAGCCGAGCTTCCTGAGCGAGGAGG
ATATCATCGAGGCAAGAGAGGCCGAAAGGTTGGCCAATAGGCTATCTCTATCTGTTCCTG
CGGGCAGCAGCGAGCACGGGGAGCATGCGAAGAAGTACTCTGGGTCGGTATTAGCAAATG
GTGAGAAATAGTACCAGTAAAGTTTTCACTTTGGCAAATTTTCCATGGTTCCTGCGGTTG
TACAGTAGCAACCGTTGCGGTCTGAGCCCTTGTTTCACACGGTTTTGCGTGTTGACACGA
ATCCTGCTGATGTAGAGTGACTAATAAACAGACGCTACTGTGGTGTTTTCATCATAACAT
GTGGAGGGCTCGAGTTAGCTGTGGCGGACGCCAAAATCTGCCCTTGCTAGTTTTCTCTTT
CTTAAAGCAAATTCATACCCATAAAAAAAAAAAAAAAAA

Homology of Contig U35_7085 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g53680.1	561	8e-134	protein\|6-phosphofructokinase, putative, expressed
Brachypodium v1_2	Bradi2g49280.1	565	3e-137
Arabidopsis v10	AT4G26270.1	489	6e-100	\| Symbols: PFK3 \| phosphofructokinase 3 \| chr4:13301094-13304030 REVERSE LENGTH=489