barSeed - Barley Seed Development Database

Probe CUST_41333_PI390587928

Source Contig U35_7089

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41333_PI390587928	Hv_44K_v2	TATCATGCTATTGCTATTGCTTTGTCTTTAATGGAAGCATACTCGTTGAGTGTCCAACAT	691	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360855	3588	2e-24	713 - 772	100	60 / 60	plus	ABC05364 ABC05365 ABC31780
MLOC	MLOC_42911.3	2996	2e-24	173 - 232	100	60 / 60	plus	ABC05364 ABC05365 ABC31780
MLOC	MLOC_42911.2	3057	2e-24	191 - 250	100	60 / 60	plus	ABC05364 ABC05365 ABC31780
MLOC	MLOC_42911.1	2661	2e-24	200 - 259	100	60 / 60	plus	ABC05364 ABC05365 ABC31780
JLOC1	JLOC1_27734.1	2995	8e-25	287 - 346	100	60 / 60	plus
Harvest21	ABC14260	742	3e-25	680 - 739	100	60 / 60	plus
Harvest35	U35_7089	754	3e-25	692 - 751	100	60 / 60	plus

Contig Sequence (754 bp)

>U35_7089 754 Hv_44K_v2
AAAGACGAATATANGCCTTGATCTAAGAAAGTATGCCATTCTTCGTGGCCTCTGCCATAA
GGTAGGACTTGAGCTAGTTACCAAAGACTACGACATGGATACACCACATGCATTCAGAAA
GTCTGATATCATCAGTATTGTTCCCATCTACAAGCATGTTGCATGCTCATCAGCAGATGG
TCGCACCCTGTTGGAGTCATCCAAGACTTTCCTGGACAAAGGAAAACTTGAGGATGCTGT
TAACTACGGCACAAAGGCTCTTGCAAAACTGGTTGCTGTTTGTGGTCCGTATCATAGAAT
GACCGCAGGAGCATACAGCCTCTTGGCAGTAGTGCTTTATCATACTGGGGACTTCAACCA
GGCAACTATCTATCAACAGAAGGCTTTAGATATTAACGAGAGGGAACTTGGACTTGATCA
CCCAGATACTATGAAAAGCTATGGAGATCTTGCTGTTTTCTACTATCGCCTGCAACATAC
AGAATTGGCACTAAAGTATGTCAACCGTGCCCTATATCTTTTGCACCTGACATGTGGCCC
ATCTCACCCTAATACTGCTGCAACTTACATCAATGTTGCTATGATGGAAGAAGGGTTGGG
TAACGTCCATGTAGCACTCCGTTACCTGCATGAGGCGCTAAAATGTAACCAACGGCTGCT
TGGTGTTGATCACATACAGACGGCTGCTAGTTATCATGCTATTGCTATTGCTTTGTCTTT
AATGGAAGCATACTCGTTGAGTGTCCAACATGAA

Homology of Contig U35_7089 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g23990.2	1162	1e-148	protein\|tetratricopeptide repeat domain containing protein, putative, expressed
Brachypodium v1_2	Bradi3g53907.1	1763	5e-159
Arabidopsis v10	AT4G28080.1	1819	6e-149	Tetratricopeptide repeat (TPR)-like superfamily protein \| chr4:13948993-13957840 REVERSE LENGTH=1819