- Probe CUST_41332_PI390587928
- Source Contig U35_7090
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_41332_PI390587928 | Hv_44K_v2 | ATTGATTTCGTCAAGAGCTTCAAAGGAGCAGCCCAGATACTTGAGAAGCAGGGATACACA | 778 | GeneList: lightcyan1 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.438 | 0.492 | 0.926 | 1.229 | 1.303 | 1.280 |
| Raw | 50.345 | 78.445 | 140.932 | 280.406 | 111.336 | 118.836 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_76600.3 | 1163 | 2e-24 | 728 - 787 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_76600.1 | 1646 | 2e-24 | 871 - 930 | 100 | 60 / 60 | plus | ABC08635 |
| MLOC | MLOC_76600.2 | 1658 | 2e-24 | 866 - 925 | 100 | 60 / 60 | plus | ABC08635 |
| MLOC | AK369100 | 2319 | 7e-23 | 832 - 891 | 98 | 59 / 60 | plus | ABC08635 |
| JLOC1 | JLOC1_51084.1 | 1797 | 8e-25 | 876 - 935 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC14927 | 866 | 3e-25 | 779 - 838 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_7090 | 866 | 3e-25 | 779 - 838 | 100 | 60 / 60 | plus |
Contig Sequence (866 bp)
>U35_7090 866 Hv_44K_v2 CATCCAAGCAGCAGCACCGCCATAGACATACTGCGCACGCCCAGACCAATCTGCTGCTTC CGGGCTTGCCGGGTTCAGCGGATCGTGAGCTTAGACAGACCGCTCGATCAGAGCGCTCCT GAGGCACCGATCCTGCCCCCGCGCGATGGCGTCCCCGCCGCCGCCGCTGCTGCTAACGCT GGTGTGGGCGGCGGCGCTCCTGTGGTGCGGCGGATGCGACGCGCGGTTCGTTGTGGAGAA GAACAGTCTCAGGGTGACGGCGCCGGTGGCACTGAAGGGTGCCTACGAGTGTGCCATCGG CAACTTCGGCGTGCCGCAGTACGGCGGCACCATGGTCGGCGTCGTGGCCTACCCCAAGGC CAACCGGAAGGCCTGCAAGGGGTTCGATGACTTCGATGTTTCCTTCAAGGCCAGGCCCGG GGCGCTGCCCACCTTCCTGCTCGTCGACAGGGGAGATTGCTACTTCACAAAGAAGGCATG GAACGCGCAAAATGCAGGAGCAGCGGCGATCCTTGTTGCCGATGACAGGGATGAACCTTT AATCACGATGGACACGCCTGAAGAGAGTGGAAGGGTGGAATATTTAGAGAACATCACCAT CCCCTCGGCGCTAATATCCAAAAGCTTCGGGGATAGGCTCAAGAAAGCTATCGATAATGG AGACATGGTTAATGTGAACTTGGATTGGAGGGAATCTCTGCCCCATCCTGATGAGCGTGT TGAGTATGAATTCTGGACTAACAGTAACGATGAATGTGGTCCAAAATGCGATAGCCAGAT TGATTTCGTCAAGAGCTTCAAAGGAGCAGCCCAGATACTTGAGAAGCAGGGATACACACA GTTCACTCCGCATTACATTACATGGT
Homology of Contig U35_7090 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os12g02390.1 | 729 | 1e-129 | protein|vacuolar-sorting receptor precursor, putative, expressed |
| Brachypodium v1_2 | Bradi4g44380.1 | 624 | 8e-129 | |
| Arabidopsis v10 | AT3G52850.1 | 623 | 7e-105 | | Symbols: VSR1, BP-80, ATELP, BP80, BP80B, ATELP1, ATVSR1, GFS1, VSR1;1, BP80-1;1 | vacuolar sorting receptor homolog 1 | chr3:19587999-19591690 FORWARD LENGTH=623 |