barSeed - Barley Seed Development Database

Probe CUST_41315_PI390587928

Source Contig U35_12109

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41315_PI390587928	Hv_44K_v2	TTATATACACTGTGATGGTGCTCTGTTTGGTCTGATGATGCCATTTGTTAAGCTGGCACC	624	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73062.2	1770	2e-24	893 - 952	100	60 / 60	plus	ABC20568
MLOC	MLOC_73062.5	958	2e-24	636 - 695	100	60 / 60	plus	None
MLOC	MLOC_73062.3	976	2e-24	635 - 694	100	60 / 60	plus	None
MLOC	MLOC_73062.1	1972	2e-24	1083 - 1142	100	60 / 60	plus	ABC20568
MLOC	MLOC_73062.4	855	3e-22	637 - 692	100	56 / 56	plus	None
JLOC1	JLOC1_48623.2	2359	8e-25	1372 - 1431	100	60 / 60	plus
JLOC1	JLOC1_48623.1	1952	8e-25	965 - 1024	100	60 / 60	plus
Harvest35	U35_12109	696	3e-25	625 - 684	100	60 / 60	plus

Contig Sequence (696 bp)

>U35_12109 696 Hv_44K_v2
CTGCTTCGCGGTGAAGGAGCCCGACGCCGACGACGAGTTCACCGGCGAGCGCGAAGCCAC
CATGGCCGGCGTCCTCGCACGCTACCGCCGCTCCCTCGTCGAGCGCACCAAACACCACCT
CGGCTACCCATACAATCTGGACTTTGAGTACGGTGCTCTTTCCCAGCTGCAGCACTTCTC
TATTAACAACCTGGGCGACCCATTCATTGAGAGCAACTATGGCGTGCACTCGAGGCAGTT
TGAAGTGGGTGTGTTGGATTGGTTTGCTCGCTTGTGGGACCTGGAAAAGGATGAATATTG
GGGATACATTACAAACTGTGGCACCGAAGGAAACCTGCATGGGATTCTTGTCGGAGAAGT
TTTCCCTGATGGGATCTTGTATGCCTCTCGTGACTCCCACTACTCAGTATTCAAAGCAGC
GAGAATGTACAGGATGGATTGTGTCAAAGTGGATACTCTTGTCTCTGGAGAAATGGATTG
TGCGGATTTTGGAAGAAAGCTACTTGAAAACAAAGATAAACCTGCTATTATTAATGTCAA
CATTGGGACAACTGTCAAGGGAGCAGTTGATGATCTTGACTTGGTTATCGAAACACTTGA
AAAAAGTGGGTTCAAGGATCGGTTTTATATACACTGTGATGGTGCTCTGTTTGGTCTGAT
GATGCCATTTGTTAAGCTGGCACCTAGGGTATCCTT

Homology of Contig U35_12109 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g33710.1	483	4e-150	protein\|decarboxylase, putative, expressed
Brachypodium v1_2	Bradi5g09817.1	470	9e-160
Arabidopsis v10	AT1G43710.1	482	1e-139	\| Symbols: emb1075 \| Pyridoxal phosphate (PLP)-dependent transferases superfamily protein \| chr1:16486534-16488298 REVERSE LENGTH=482