barSeed - Barley Seed Development Database

Probe CUST_41314_PI390587928

Source Contig U35_12110

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41314_PI390587928	Hv_44K_v2	AAATCATTAGCTGCCTATCCCAAGTCTCCTTTCCAACTGAGGACTCCGGAGATTGTGAAT	424	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354074	4533	2e-24	2708 - 2767	100	60 / 60	plus	ABC13685
MLOC	MLOC_37560.3	3141	2e-24	1691 - 1750	100	60 / 60	plus	ABC13685
MLOC	MLOC_37560.4	3371	2e-24	1498 - 1557	100	60 / 60	plus	ABC13685
MLOC	MLOC_37560.1	4030	2e-24	2178 - 2237	100	60 / 60	plus	ABC13685
MLOC	MLOC_37560.5	3118	2e-24	1216 - 1275	100	60 / 60	plus	ABC13685
MLOC	MLOC_37560.2	4055	2e-24	2158 - 2217	100	60 / 60	plus	ABC13685
JLOC1	JLOC1_24326.2	4080	8e-25	2129 - 2188	100	60 / 60	plus
JLOC1	JLOC1_24326.1	4095	8e-25	2129 - 2188	100	60 / 60	plus
Harvest21	ABC24697	541	3e-25	425 - 484	100	60 / 60	plus
Harvest35	U35_12110	534	3e-25	425 - 484	100	60 / 60	plus

Contig Sequence (534 bp)

>U35_12110 534 Hv_44K_v2
AAAAGCTCAAGAAATTGCTAAGCTGCAAGAAACATTGCATGATCTACAACTTCAAGTTGA
AGAAGCAAAGACCATGGCCACTAAGGAAAGAGAAGCAGCAAGAAAGGCAATTGAAGAAGC
ACCTCCAGTAATCAAAGAGACTCCTGTATTGGTTGAAGACACTGAAAAGATTAACTCGCT
AACAGCTGAAGTTGATCAACTGAAGGCTTTGCTGCAAGCTGAAAGGCAAGCCACAGAGTC
TGCAAAGAAAGAACATGCTGAAGCTGAACGGAGAAATGAAGAACTAATGAAGAAATTCGA
AGGCGCAGAGAAAAAGATTGAGCAACTTCAGGACACTGCCCAGAGGCTGGAAGAAAAAGC
AACTAACATGGAGTCGGAGAACAAGGTGCTTCGTCAACAGGCTGTTGCAATTTCTCCTAC
TGCGAAATCATTAGCTGCCTATCCCAAGTCTCCTTTCCAACTGAGGACTCCGGAGATTGT
GAATGCTCCGAATGGGGAGGTAAAGTCATCACCAGATTTAACCCCCATCTCACT

Homology of Contig U35_12110 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g48140.1	1558	2e-83	protein\|myosin, putative, expressed
Brachypodium v1_2	Bradi2g41977.1	1530	2e-89
Arabidopsis v10	None