- Probe CUST_41310_PI390587928
- Source Contig U35_12114
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_41310_PI390587928 | Hv_44K_v2 | ATACTGCTTGTATGAGTTTGAGCCAGCTAAATACAGAAAAGATTAGGGCGTTGGTGCGCC | 50 | GeneList: lightgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.233 | 0.162 | 0.575 | 2.583 | 2.639 | 8.407 |
| Raw | 10.635 | 10.137 | 35.384 | 216.554 | 93.939 | 319.166 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC25328 | 154 | 3e-25 | 51 - 110 | 100 | 60 / 60 | plus | ABC25328 |
| Harvest35 | U35_12114 | 154 | 3e-25 | 51 - 110 | 100 | 60 / 60 | plus |
Contig Sequence (154 bp)
>U35_12114 154 Hv_44K_v2 GCACGAGGGTGGATCGTGGCGTGCGTGCTCCGCCTATACAACCACCCCGTATACTGCTTG TATGAGTTTGAGCCAGCTAAATACAGAAAAGATTAGGGCGTTGGTGCGCCCATGGCGGCG TTCGTGCGCCGGCCCGGAAAAAAAAAAAAAAAAA
Homology of Contig U35_12114 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |