barSeed - Barley Seed Development Database

Probe CUST_41304_PI390587928

Source Contig U35_28810

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41304_PI390587928	Hv_44K_v2	AACCATGTCGTGGCCTGTTCCAGGCACACTTATGATTGAACCTACTGAAAGTGAAAGCAA	542	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.442	2.855	1.252	0.769	0.568	0.561
Raw	41.272	52.239	20.960	19.734	3.288	4.445

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36667.1	3312	2e-24	2575 - 2634	100	60 / 60	plus	ABC00491 ABC01483 ABC49689
JLOC1	JLOC1_23645.1	3557	8e-25	2547 - 2606	100	60 / 60	plus
Harvest21	ABC27882	603	3e-25	543 - 602	100	60 / 60	plus
Harvest21	ABC01485	962	3e-25	334 - 393	100	60 / 60	plus
Harvest21	ABC01483	3333	3e-25	2646 - 2705	100	60 / 60	plus	ABC01483
Harvest35	U35_28810	603	3e-25	543 - 602	100	60 / 60	plus
Harvest35	U35_259	3333	3e-25	2646 - 2705	100	60 / 60	plus

Contig Sequence (603 bp)

>U35_28810 603 Hv_44K_v2
GCTTTCGCCCATGGTTTGAAGAAGCTCGGGACAGTGACAGTGCAGGAGCTGCCCTACTTT
GACACGGTCAAGATCACTTGCGCCGATGCTAATGCCATTGCTGAGGAGGCCCGCAAAAAC
GAGATGAACCTTCGCGTTGTTGACGCAAACACGATCACCGTTGCCTTTGATGAGACCACC
ACCTTGGAGGATGTTGACAAGCTGTTCAAGGTTTTCTCTGGTGGCTTCCCTCTCCCTGAG
AAAACCGACCCTCTTGGTTCCATTTCTGCTGCTCCATGGGGATCTGCTTTGATTCTTCCA
ATTTCGTACACCTACATAGCCATGATGGGCTCTCAAGGACTAACTGAAGCCTCAAAGATT
GCGATCCTGAACGCGAACTACATGGCAAAGCGTCTGGAGAAACACTACCCAGTTCTTTTC
CGTGGAGTCAATGGAACTGTTGCCCATGAGTTCATTATTGATTTAAGAGGATTCAAGGCA
ACTGCCGGTATTGAGCCCGAGGATGTGGCGAAGCGCTTGATGGACTATGGATTCCATGGA
CCAACCATGTCGTGGCCTGTTCCAGGCACACTTATGATTGAACCTACTGAAAGTGAAAGC
AAG

Homology of Contig U35_28810 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g40940.3	630	6e-80	protein\|glycine dehydrogenase, putative, expressed
Brachypodium v1_2	Bradi2g48010.1	1034	2e-81
Arabidopsis v10	AT4G33010.1	1037	4e-76	\| Symbols: AtGLDP1, GLDP1 \| glycine decarboxylase P-protein 1 \| chr4:15926852-15931150 REVERSE LENGTH=1037