- Probe CUST_41294_PI390587928
- Source Contig U35_28816
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_41294_PI390587928 | Hv_44K_v2 | TAAAAACTTGGAGCAGGTGGTTTCGATGATACTGAATGGATTCCAACACCCTCATCCACG | 508 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK364613 | 3724 | 2e-24 | 1337 - 1396 | 100 | 60 / 60 | plus | ABC06217 |
| MLOC | MLOC_31219.1 | 2194 | 2e-24 | 1008 - 1067 | 100 | 60 / 60 | plus | ABC06217 |
| MLOC | MLOC_31219.2 | 2121 | 2e-24 | 1008 - 1067 | 100 | 60 / 60 | plus | ABC06217 |
| MLOC | MLOC_75657.4 | 1311 | 7e-23 | 305 - 364 | 98 | 59 / 60 | minus | None |
| MLOC | MLOC_75657.3 | 1500 | 7e-23 | 318 - 377 | 98 | 59 / 60 | minus | None |
| MLOC | MLOC_75657.1 | 1482 | 7e-23 | 354 - 413 | 98 | 59 / 60 | minus | None |
| MLOC | MLOC_75657.2 | 1551 | 7e-23 | 354 - 413 | 98 | 59 / 60 | minus | None |
| JLOC1 | JLOC1_20537.1 | 2339 | 8e-25 | 1008 - 1067 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_50478.2 | 1400 | 4e-23 | 994 - 1053 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_50478.1 | 647 | 4e-23 | 241 - 300 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC27891 | 645 | 3e-25 | 509 - 568 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_28816 | 645 | 3e-25 | 509 - 568 | 100 | 60 / 60 | plus |
Contig Sequence (645 bp)
>U35_28816 645 Hv_44K_v2 GGGAGGCATCTGCGCAGGAGGCACTGGAGCTGCTTGTCGAGCTGGCTGGTGCAGAGCCAA GGTTCCTGCGGCGACAAATTGCCGATGTGGCAGGAGCAATGCTGCAAATAGCGGAAGCTG CACAGTTGGAGGATGGAACTAGGCACCTGGCTGTCGAGTTTGTCATTACTCTTGCTGAGG CCAGGGAGCGTGCACCAGGAATGATGCGCCGGCTCCCACAGTTTGTTGGCAGGCTCTTCC AAGTACTTATGCAGATGTTGCTTGATGTAGAGGATGACCCTTCCTGGCACACTGCGGAAA CCGAGGATGAAGATGCAGGTGAAGGGAACAACTATGGAGTGGCGCAGGAGTGCCTTGACC GCCTTGCCATTGCCATTGGTGGGAATGCAGTCGTGCCGATTGCATCTGAGCTGCTTCCAC AATATCTTTCTGCTCCAGAGTGGCAGAAGCACCATGCTGCGCTCATCACGCTTGCACAGA TTGCAGAAGGATGCGCAAAGGTTATGCTTAAAAACTTGGAGCAGGTGGTTTCGATGATAC TGAATGGATTCCAACACCCTCATCCACGTGTGCGGTGGGCTGCAATCAATGCCATCGGTC AGCTGTCTACAGATTTGGGCCCAGACTTGCAGGTTCAATACCACC
Homology of Contig U35_28816 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os07g38760.1 | 1124 | 3e-124 | protein|HEAT repeat family protein, putative, expressed |
| Brachypodium v1_2 | Bradi1g23750.2 | 1083 | 6e-126 | |
| Arabidopsis v10 | AT5G19820.1 | 1116 | 2e-97 | | Symbols: emb2734 | ARM repeat superfamily protein | chr5:6695731-6701247 REVERSE LENGTH=1116 |