barSeed - Barley Seed Development Database

Probe CUST_41291_PI390587928

Source Contig U35_28819

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41291_PI390587928	Hv_44K_v2	ATGCATCATAATGCTCTTGCTGTTCAAGTTCTCAATAGAGCTCACACAAAACTTAAGCTC	656	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248453.1	2898	2e-24	1291 - 1350	100	60 / 60	plus	ABC14341
MLOC	MLOC_14434.1	2334	2e-24	1557 - 1616	100	60 / 60	minus	ABC14341
JLOC1	JLOC1_9863.1	2360	8e-25	719 - 778	100	60 / 60	plus
Harvest21	ABC27898	719	3e-25	657 - 716	100	60 / 60	plus
Harvest35	U35_28819	719	3e-25	657 - 716	100	60 / 60	plus

Contig Sequence (719 bp)

>U35_28819 719 Hv_44K_v2
GGGAGCGGCTACGCCGCGAGCGTTCCCGGGAGCGTGGCCTTGGGGTCACTCGGTACGAGT
GGCGTGCCCGTCGGTCTGGCGGCCCCTCTTCTCGTGCGGGCATTGTCGTGCCTCTCCCCT
CAGGGGTTTACTTTCAGGACCTGTCTGGCTCTGAACCAGTACTCATGCTACAAAGTTCTT
CCACATCACCAATTATTGACCCACATCTATCTCCCGATGGGACCATGATTGCATATGTCA
GGGATGATGAACTGCAGTGCAAGATATATAACTTCGGTTTTGATGATGGCGAAACTAGGC
AATTGACCTACGGTGCAAGAGAAAGTGGAAAGGTCCATGGACTTGCTGAATATATTGCGC
AGGAAGAGATGGAAAGGAAGATGGGATTTTGGTGGTCTCCTGATAGTAAACACCTTGCAT
TTACTGAAGTAGATTCATCTGCAATTCCACTATACAGAATTATGCATCAGGGCAAAAATT
CTGTTGGTTTAGATGCTCAAGAAGATCATGCTTACCCCTTTGCTGGAGCAGCTAATGTTA
AAGTGCGACTGGGAGTTGTTCCTTCCAGTGGAGGAGAAGTAACTTGGATGGATCTCCTTT
GTGGAGAACCAAATGGAGCACATGGCGATGAAGAATATCTTGCTAGGGTTAACTGGATGC
ATCATAATGCTCTTGCTGTTCAAGTTCTCAATAGAGCTCACACAAAACTTAAGCTCCTC

Homology of Contig U35_28819 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g18850.1	597	1e-93	protein\|OsPOP5 - Putative Prolyl Oligopeptidase homologue, expressed
Brachypodium v1_2	Bradi3g10630.2	727	6e-133
Arabidopsis v10	AT5G24260.1	746	8e-78	prolyl oligopeptidase family protein \| chr5:8234865-8237810 REVERSE LENGTH=746