barSeed - Barley Seed Development Database

Probe CUST_41278_PI390587928

Source Contig U35_28823

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41278_PI390587928	Hv_44K_v2	TCATTGCTGATGACTCGGAACTTTTTGGTGCATCATGCTATGCTGCTAAGGTCACGCTTA	490	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.068	1.443	1.685	1.317	0.655	0.406
Raw	27.233	59.367	58.713	71.418	12.521	8.228

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44151.4	1156	2e-24	352 - 411	100	60 / 60	plus	None
MLOC	MLOC_44151.3	1644	2e-24	398 - 457	100	60 / 60	plus	ABC18786
MLOC	MLOC_44151.2	1524	2e-24	280 - 339	100	60 / 60	plus	ABC18786
JLOC1	JLOC1_28586.2	1555	8e-25	311 - 370	100	60 / 60	plus
JLOC1	JLOC1_28586.1	1427	8e-25	183 - 242	100	60 / 60	plus
Harvest21	ABC27902	598	3e-25	491 - 550	100	60 / 60	plus
Harvest35	U35_28823	598	3e-25	491 - 550	100	60 / 60	plus

Contig Sequence (598 bp)

>U35_28823 598 Hv_44K_v2
GGCATTTACTGAGAATACCTGGAGGACATATTTGACTCAGCTAATAGGCCTCTTGAAGGC
AAGCGATGGTGGCTTGAGGCAGAGGATCCGTTCCAATGCCTGGCAGTTTGCATGGATCTT
AATGAAGCTTTAAGAAGCTCCTCTCCAGAAACAGTGATCTCACATATTCCTGTGCACCAG
GATGGCTCTTGTAATGGCCTGCAGCACTATGCAGCTCTTGGAAGGGATAAGCTGGGTGCA
GTTGCTGTCAACTTAGTTTCCGGGGAGAAACCTGCAGATGTTTACTCTGGAATAGCTGCC
AGGGTGGTGGAAATTATGAAGAGAGATGCACAAAAAGACCCAGCTAAAGATGCTGATGCA
GCACGTGCTCGCTTGTTAGTTGATCAGGTGGATAGGAAATTGGTAAAACAAACAGTGATG
ACATCTGTGTATGGTGTGACTTATGTTGGAGCACGTGAACAAATAAAAAGAAGATTAAAG
GAGAGGGGGGTCATTGCTGATGACTCGGAACTTTTTGGTGCATCATGCTATGCTGCTAAG
GTCACGCTTACAGCACTTGGTGAGATGTTCGAAGCTGCTCGTAGTATCATGAACTGGC

Homology of Contig U35_28823 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g07120.2	952	1e-100	protein\|DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed
Brachypodium v1_2	Bradi4g08880.1	960	4e-106
Arabidopsis v10	AT5G15700.2	1051	3e-90	DNA/RNA polymerases superfamily protein \| chr5:5115572-5121609 REVERSE LENGTH=1051