barSeed - Barley Seed Development Database

Probe CUST_41252_PI390587928

Source Contig U35_16862

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41252_PI390587928	Hv_44K_v2	AACTTTTCTTCTTGGGTGTATCAAGATGTCTGGAAATGATTCTCAGGCTGCAGCTGACCG	326	GeneList: orange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.982	0.710	1.894	2.192	0.804	0.663
Raw	30.793	34.693	81.028	147.767	20.466	17.725

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6384.1	1462	2e-24	927 - 986	100	60 / 60	minus	ABC08111 ABC08113
JLOC1	JLOC1_4157.1	1463	8e-25	323 - 382	100	60 / 60	plus
Harvest21	ABC08112	635	3e-25	322 - 381	100	60 / 60	plus
Harvest21	ABC08111	1393	4e-24	263 - 320	100	58 / 58	plus	ABC08111
Harvest35	U35_16862	641	3e-25	327 - 386	100	60 / 60	plus
Harvest35	U35_16861	1393	4e-24	263 - 320	100	58 / 58	plus

Contig Sequence (641 bp)

>U35_16862 641 Hv_44K_v2
TCGAGCACTGTTGGCCTACTGACCGTCTCCGTATCTTTCTCCCCCTTCCCCTCCGCCGAC
TCCTAAAATCCCCAACCCGACCCGAGCCGCGGCTCCAACAGAAAATCGCCCCTCATTCCA
TCGCCGTGCCCTAGCGCTGCCGCGGCCTCGCCGCCGACGCCTCCCCCCGCCCCCCCCGGA
CGAGCCCCTCGCCTCACCCGTGCGTCGCTGCCGCCGTCGACGTTCCCGTCCTACCTCGTC
GCGAAATCGCGACCCTGCCCCCGCTCTGCTCCGTCCGCGACTCCGCCGTTGGTGTTCGAG
GATATTGAGATTGCTGGTCCTGTATAAACTTTTCTTCTTGGGTGTATCAAGATGTCTGGA
AATGATTCTCAGGCTGCAGCTGACCGGATAAAGGCACAGGCCTTGTCAAATGCTAAGGGA
TTGAGCAGGGCTCAAGCTGAACGTGCAGCGGAAGCTGCCGCTCGCAATGTCAATGCCTAT
GGGCAGAAGGAAGAGGGACCAAGCCGCTGGCAGGAGAGGAAGGAAGCCAAGAGGCAGATG
TATCTGATGAGTACCGAGAAGGCTGTGAGGCTGGGTGTGAGACCAAATGCTGAACCAGCT
TCTGCAACTGCTGGGGGCCAATGTCAGAAGTGCTTCCAGCC

Homology of Contig U35_16862 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None