barSeed - Barley Seed Development Database

Probe CUST_41246_PI390587928

Source Contig U35_16869

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41246_PI390587928	Hv_44K_v2	TGAGTGTTTGGGATCAGATCACGAAATAGCAGAAACTGTTCTTGCCTGCCCTTGTTGTGT	919	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.606	1.475	1.178	0.909	0.428	0.421
Raw	8856.780	12912.147	8960.367	10677.063	1807.677	1925.767

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_16869	1033	3e-25	920 - 979	100	60 / 60	plus

Contig Sequence (1033 bp)

>U35_16869 1033 Hv_44K_v2
GCCGACCGCCGCCTCCGCCGCCTAGCCACCCCCCACGCGCCAGGAGAAGAGAAGCCAGCG
CCGCCGGCCATGGCGGAGGAGGAGGGGACGCAGCAGCTGCCGTTCGTGCGGGAGACGGTC
CTGAAGAAGAGGAAGCAGAACGAGGAGTGGGCCACCAAGAACCGGGAGCGCAAGGCGGCC
AAGAGGCAGCGCCGCCGCCACGACGCCAAGGGCGCCATCAAGCGCCCCGAGGACTTCGTC
AGGGAGTTCCGCAACAAGGAGCTCGACTTCCTGCGGATGCGCACGCGCCTCAAGGTCCGC
AAGCTGCGCCCCGCCGAGCCCGTACACGCCAACCTGCTCTTCGCCATCCGCATCCCAGGC
ACTGCCGACTTGCACCCGCAAATCAGGAAGATCTTGGCCAGGCTGCGGCTGACCCAGGTC
CTCACAGGAGTCTTCCTCAAGGCCACCGAGGCAAACCTCAAGAGGCTTGCTGCTGTTGGG
CCGTTTGTCACCTATGGGTTCCCCAATTTGAAGAATGTGAAGGAGCTTATCTACAAGAAG
GGTCGCGGGTATTTCGACAAGGAGCCTTTCCCCCTTACCAGCAATGATCTAATCGAGAAG
GCTCTTGGAGAACACGGCGTCATATGTTTAGAAGATGTCGTGCACGAAATCTCCACGGTC
GGGCCGCACTTCAGGGAAACGGCGAGCTTTCTCATGCCCTTCAAGCTCAAGTGTCCGGAG
AGGAGGTTGCAGATGAAGAAGAAACCCTTCAAGGATGGTGGCGACTCGGGCAACCGCGGG
GACAAGATCAACGAGCTACTCGAGAAGCTGAACTGAGGCAGTCTCAAACCTGCGTCTGCA
AACAAGCAATGGATCCGTTATTACCGTGTCGGTTTTGTAATAGCATAGCTGAATGTACCT
TTGTTTCGGAAACCCTACCTGAGTGTTTGGGATCAGATCACGAAATAGCAGAAACTGTTC
TTGCCTGCCCTTGTTGTGTGCTCGCGCCTTCTGAGCTGTTTGACTTTTTACTTGCCAAAA
AAAAAAAAAAAAA

Homology of Contig U35_16869 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g42920.1	249	9e-133	protein\|60S ribosomal protein L7, putative, expressed
Brachypodium v1_2	Bradi3g41850.1	252	4e-138
Arabidopsis v10	AT1G80750.1	247	1e-68	Ribosomal protein L30/L7 family protein \| chr1:30349052-30350434 FORWARD LENGTH=247