barSeed - Barley Seed Development Database

Probe CUST_41241_PI390587928

Source Contig U35_28845

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41241_PI390587928	Hv_44K_v2	AGCATGTCGGAGACATCGCTCAAGACCAAGGACCCTTACCCCATGATCGACTCCGCTGAA	75	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370424	2605	2e-24	1188 - 1247	100	60 / 60	plus	ABC14392
MLOC	MLOC_6210.4	1064	2e-24	284 - 343	100	60 / 60	plus	ABC14392
MLOC	MLOC_6210.3	1471	2e-24	771 - 830	100	60 / 60	plus	ABC14392
MLOC	MLOC_6210.2	1838	2e-24	1062 - 1121	100	60 / 60	plus	ABC14392
MLOC	MLOC_6210.1	2033	2e-24	1257 - 1316	100	60 / 60	plus	ABC14392
JLOC1	JLOC1_4036.1	1957	8e-25	1180 - 1239	100	60 / 60	plus
Harvest21	ABC27930	298	3e-25	76 - 135	100	60 / 60	plus
Harvest35	U35_28845	298	3e-25	76 - 135	100	60 / 60	plus

Contig Sequence (298 bp)

>U35_28845 298 Hv_44K_v2
CCGTCGGTGCTGGCACCATGGCACCGAGAATTCCCGTCTTACCTCGTGTTCAACGGCACC
AAGATCAAGGGGCAGAGCATGTCGGAGACATCGCTCAAGACCAAGGACCCTTACCCCATG
ATCGACTCCGCTGAAGCCGTAGCGCCCGGCAGAGCGGTAGATGACGCAAAGATTTGCCTG
CAGGGGTCGGTGGACCCAGAGAAGGTGAAGGGCAAGATCGTGGTGTGCCTGCGTGGGACA
AGCGCGCGTGTGGCCAAGGGCCTGACGGTGCTGTAAGCCGGCGGCGCCGCGATGGTGC

Homology of Contig U35_28845 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None