barSeed - Barley Seed Development Database

Probe CUST_41239_PI390587928

Source Contig U35_16870

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41239_PI390587928	Hv_44K_v2	TTGCTACTGCTATAACTTGTGTAACGATTGAACTACCTGATGGTTGCTTCACTTTTACAA	1909	GeneList: lightsteelblue1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.906	2.463	1.237	0.721	0.353	0.432
Raw	6969.757	5496.810	2437.990	2217.488	386.119	514.212

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63939.2	7113	2e-23	5075 - 5132	100	58 / 58	plus	ABC06989
JLOC1	JLOC1_41934.2	3897	1e-23	1613 - 1670	100	58 / 58	plus
JLOC1	JLOC1_41934.1	4314	1e-23	2030 - 2087	100	58 / 58	plus
Harvest21	ABC06989	1923	4e-24	1841 - 1898	100	58 / 58	plus	ABC06989
Harvest35	U35_16870	1981	3e-25	1910 - 1969	100	60 / 60	plus

Contig Sequence (1981 bp)

>U35_16870 1981 Hv_44K_v2
GCTCAATCAATCCGCCGTTTGTTTATTTAACCTCGCCCGTCCCATTCTTGGAGAGCAAGA
AGAACAGCACGCCACCACCTCGCCCAAAGACACACACACACAGCCCTAGAAGGAATCCCC
GCCCCCCGCCGACCCCTTCCCGTCCTTCACAGATCCGGCGACCGACAAGGCATGGTGTCC
AACGGGGAGCTGTCGCAGCCGCAGGCGGGGGAGTACGGCACCGCCGTGATGCGGCGCCGG
CCCAAGACCAAGATCGTTTGCACGCTCGGCCCGGCCTCGCGCTCCGTCGATATGATCGAG
AAGCTGTTGCGCGCCGGGATGTGCGTCGCCCGCTTCAACTTCTCCCACGGCTCCCACGAA
TACCACCAGGAGACGCTCGACAACCTGCACGCCGCCATGGAGCGCACCGGGATCCTCTGC
GCCGTCATGCTCGACACCAAGGGTCCAGAGATCCGTACTGGATTTTTGAAAGATGGGAAG
CCTATCCAGTTGAAAAAGGGCCAAGAAATTGTAATCTCCACAGATTATACCATAAAGGGG
GACGACAAGATGATATCGATGAGCTATAAGAAGCTAGCAGTTGATCTGAAGCCAGGCAGT
GTTATATTATGCGCTGATGGTACTATCACTCTTACTGTGCTTCACTGTGACAAAGAGCAA
GGTCTCGTTCGTTGCTGTTGTGAGAACACTGCTATGCTTGGTGAGAGGAAGAATGTCAAT
CTTCCAGGGGTCGTTGTTGATCTCCCAACACTCACTGAAAAGGACAGGGAGGATATCCTT
CAATGGGGTGTCCCGAACAAGATTGACATGATTGCTTTGTCGTTTGTTCGCAAGGGTTCA
GATCTTGTGGAGGTCCGGAAGGTACTTGGGGAGCATGCCAAGTCAATAATGCTGATGTCA
AAGGTTGAGAACCAAGAAGGAGTAGCTAACTTTGACGATATCCTGGCACAGTCTGATGCT
TTTATGGTGGCAAGAGGTGATTTGGGAATGGAAATCCCTGTAGAGAAGATCTTTTATGCA
CAGAAGGTGATGATTTTCAAGTGCAACATTCAGGGCAAGCCAGTTGTGACTGCAACCCAG
ATGTTGGAGTCTATGATCAAGTCTCCTCGCCCTACCCGAGCGGAAGCAACCGACGTGGCC
AACGCAGTTCTTGATGGCACTGACTGTGTCATGCTCAGTGGCGAGACAGCTGCCGGTGCT
TATCCAGAACTGGCAGTGCAAACTATGGCCAAGATCTGCTTGCAGGCTGAGTCATGCGTG
GACTATTCTGCTGTTTTTAAATCAATCATGTCATCAGCCCCGATTCCCATGAGCCCATTG
GAGAGCCTTGCCTCATCAGCTGTCCGCACAGCGAACTCAGCTAAGGCGACGCTTATCTTG
GTACTGACCAGGGGAGGAACAACTGCAAGGCTTGTAGCCAAGTATAGGCCATCCATGCCG
ATACTGTCTGTCGTGGTTCCTGAGCTCAAGACAGTCGAGTTTGATTGGATCTGCAGCGAC
GAGGGGCCTGCCAGGCAAAGCCTTATCGTGAGGGGCGTGATCCCAATGCTGAGTGCTGGC
ACTGCGAAGGCGTTTGACAGCGAAGCCACGGAAGAGGCACTGAGGTTTGCCGTGAAGAGC
GCCAAGGAGACGGGGCTTTGCAACGCTGGTGAGTCCATTGTGGCCCTTCACCGCATCGGG
AATGCATCTGTCATCAAGCTCTTGACCGTGTAAGCTTAGTGGCAGCGGCAACGCAACACC
ATTTTGCCTGGGGATTTTCCATTTTTGTGAGGCTACGCATACCCACAGTAATTTGCTGCC
AAGATTGCGGCAGTGCAACCTGGTTAAAACTTTGTGTTATCAAGTTGTGGCTGTTTACTC
TTTATGAGAGGGTATGGAAACACCAAAACTATTATCCTAGCAGCTTGTTTTGCTACTGCT
ATAACTTGTGTAACGATTGAACTACCTGATGGTTGCTTCACTTTTACAAAAAAAAAAAAA
A

Homology of Contig U35_16870 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g16960.1	511	protein\|pyruvate kinase, putative, expressed
Brachypodium v1_2	Bradi2g10530.1	515
Arabidopsis v10	AT5G56350.1	498	Pyruvate kinase family protein \| chr5:22820254-22822529 REVERSE LENGTH=498