barSeed - Barley Seed Development Database

Probe CUST_41238_PI390587928

Source Contig U35_16871

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41238_PI390587928	Hv_44K_v2	GTAGATAGGACCATGATTATTACATTATATCATATGGGGCCTGTTACGTGATGTTTTAGT	1682	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.622	1.665	1.148	0.807	0.271	0.286
Raw	4543.500	7395.507	4427.643	4933.957	575.306	665.922

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_7593.3	2590	8e-25	2390 - 2449	100	60 / 60	plus
JLOC1	JLOC1_7593.2	2005	8e-25	1805 - 1864	100	60 / 60	plus
JLOC1	JLOC1_7593.1	1912	8e-25	1712 - 1771	100	60 / 60	plus
Harvest21	ABC06424	1749	3e-25	1674 - 1733	100	60 / 60	plus	ABC06424
Harvest35	U35_16871	1758	3e-25	1683 - 1742	100	60 / 60	plus

Contig Sequence (1758 bp)

>U35_16871 1758 Hv_44K_v2
CAAGCCCAAGCTCTATCCTCCCTTCCCTTCCCTTCATCCTCTTCCGTTCCGGCAGCCGCC
CAAAACCCTACCGGATTCATACGGAGTAGATCTGGTTTGGTTGGTTTCTACTAGGGTTGA
ATAGGATGGCCGAGTCCAGGACGGGGGAGAACGACGTGTACGAGGATGAGCTGCTCGACT
ACGAGGAGGACGACGACAAGGTGGTCCTCGAAGCCTCCGCTGCCAAGCCCGCCGCCGACG
CCAAGAAGGGCTACGTCGGCATCCACAGCTCCGGATTCCGCGACTTCCTCCTCAAGCCCG
AGCTGCTACGGGCCATCCAGGACTGCGGATTCGAGCACCCTTCCGAAGTGCAACATGAGT
GCATCCCTCAAGCAATCCTCGGAATGGATGTCATCTGCCAAGCAAAATCCGGGATGGGCA
AGACTGCTGTCTTTGTCCTGTCTTCTCTCCAGCAGATCGATCCTACTGCTGGTCAGGTGG
CAGCACTTGTATTGTGCCACACCAGAGAGCTGGCTTACCAGATTTGCAGCGAGTTCGAGA
GGTTCAGCAGATTTCTGCCTGAATTAAAGGTTGCTGTATTCTATGGAGGTGTTCACATCA
AGAAACACAAGGATTTGCTCAAGAATGACTGCCCCCATATTGTGGTGGGCACACCCGGAA
GGATTCTAGCTCTAGCTAGAGACAAGGACCTTTCTTTGAAGAATGTCAGGCATTTCATTC
TTGACGAGTGTGACAAGATGCTCGAGTCACTGGACATGAGGAGGGATGTCCAGGAGATCT
TCAAGATGACACCTCATGATAAGCAGGTCATGATGTTTTCGGCAACTCTCAGCAAGGAGA
TCCGTCCGATTTGCAAGAAATTTATGCAAGATCCGATGGAAATTTATGTTGACGATGAGG
CGAAGCTGACCCTTCACGGTCTAGTTCAGCACTATATAAAATTGACTGAGTCGGAGAAGA
ACAGAAAATTGAACGATCTCTTGGATGCCCTTGATTTCAACCAAGTTGTGATATTTGTGA
AGAGTGTTAGCCGGGCTGCAGAGCTGAACAAGTTGCTGTGTGAATGCAACTTCCCTTCAA
TCTGCATCCATTCTGGCATGACCCAGGAAGAGAGGCTGACCCGATACAAGAACTTCAAGG
AAGGGCACAAGAGGATTCTTGTGGCGACGGATCTGGTTGGCAGAGGAATCGACATTGAGC
GTGTGAACATTGTGATAAACTATGACATGCCTGATTCAGCTGATACCTACTTGCACAGGG
TTGGAAGAGCTGGGCGTTTTGGCACCAAGGGGCTTGCCATAACTTTTGTTTCGTCGGCCT
CGGACTCGGACGTTCTTAACCAAGTGCAAGAACGGTTTGAGGTGGACATCAAGGAGCTGC
CTGAGCAGATTGACACTTCAACATACATGCCGTCGTAGACGACCACCCCCGGACATTGCA
AGGAGGACGGAAGGAGAAGATGGAAGATGGAGTCCTTGAATGTTTGCTTGAAGTGATGGT
TGTTTTTTTTGCTTGCCTGCCTGCCCTGCTGCTAGGGAGGCATCAGCAGCAGCTGTACCC
TATTTAATCCGAGAGAGAAGTTTGTTTTGTTAATTAGGCCAAATGAAATGATTTAACTTG
AGCTAGAATTGGATGGATGAATGTATCATGGTTTGCTTTGAATTTTTAAAAGATCATGAT
TAGTAGATAGGACCATGATTATTACATTATATCATATGGGGCCTGTTACGTGATGTTTTA
GTAAAAAAAAAAAAAAAA

Homology of Contig U35_16871 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g36920.2	345	protein\|DEAD-box ATP-dependent RNA helicase, putative, expressed
Brachypodium v1_2	Bradi2g40807.1	455
Arabidopsis v10	AT5G11170.1	427	DEAD/DEAH box RNA helicase family protein \| chr5:3553334-3556646 FORWARD LENGTH=427