barSeed - Barley Seed Development Database

Probe CUST_41235_PI390587928

Source Contig U35_16874

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41235_PI390587928	Hv_44K_v2	AGGCTGGTGAAATAAACTTTGCCTGCATCTGGTAACCTGGATCTGGTTATGTTTAAAAAA	3037	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.808	1.773	1.179	0.811	0.398	0.448
Raw	7407.203	11170.677	6618.530	7065.247	1235.866	1481.757

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC07608	2831	8e-21	2759 - 2813	98	54 / 55	plus	ABC07608
Harvest35	U35_16874	3108	3e-25	3038 - 3097	100	60 / 60	plus

Contig Sequence (3108 bp)

>U35_16874 3108 Hv_44K_v2
TCCTCCAATTGAAGTCGCTGACTTGATCAAGCTGATCTGCAAAATATTCTGGTCCTCAAT
TTATCTAGAAATTCCAAAACAACTGTTTGAACCAAATATCTTCAATGCATGGATTGTTCT
GTTCTTAAACTTGTTGGAAAGGCCAGTTCCATTGGAAGGGCAACCATCGGATCCTGACGC
TAGGAAAGCTTGGGGCTGGTGGAAAGTCAAGAAATGGATTACCCATATCTTGAACCGTTT
ATACAGTCGGTTTGCTGATATGAAGGTTCATAAACCAGAGAGTAAAGCTTTTGCTCAAAT
GTTTCAAAAGAACTATGCTGGAAAAATTCTGGGATGCCATCTACAGTTGCTCAATGCAAT
TCGCACTGGTGGCTATTTGCCTGAGAGGGTTATTAATCTTATCCTTCAATATCTCACCAA
CAGTCTCACGAAGAACAGCATGTATCAGCTGATGCAACCACAAATCGACATAATTCTTTT
TGAGATAATATTTCCATTAATGTGCTTCAATGACAATGACCAAATGTTATGGGACGAAGA
TCCGCATGAGTATGTTCGGAAAGGCTATGATATAATTGAAGATTTGTATAGTCCTCGAAC
AGCTGCTATGGATTTCGTCAGTGAATTGGTAAGAAAAAGGGGAAAAGGCAACCTACAAAA
GTTTATCCAATTTATTGTGGAGATATTCATGAGGTATAACGAGGCATCAATTGAAGCAAA
ACCCTATCGCCAAAAAGATGGTGCCCTTCTTGCCATTGGGACATTATGTGATAGGCTGAA
ACAAACTGATCCATATAAGGCTGAGCTAGAGCGAATGTTAGTTCAGCATGTCTTTCCAGA
GTTCAGCAGTCATGTTGGACACTTGCGTGCAAAGGCAGCATGGGTTGCTGGGCAGTATGC
GCACATCACCTTCTCAGACCAGGACAATTTTCGCAAAGCTATGCATTGTGTTATCTCTGG
TTTGCGTGATCCAGAACTTCCCGTCAGGGTTGATTCAGTTTTTGCTCTCCGTTCTTTCGT
TGAGGCATGTAAAGATCTGGATGAGATCCGTCCTATCCTTCCACAGCTTCTTGATGAATT
TTTTAAGCTTATGGGTGAAGTTGAGAATGAGGATCTTGTTTTCACCCTTGAGACAATTGT
TGATAGATTTGGTGAAGAGATGGCACCATATGCCCTTGGACTGTGCCAGAGTTTGGCTGC
TGCCTTCTGGAGATGCATGGCTAGTTCAGAAGCTGATGATGAAGTAGAGGACTCGGGTGC
TTTGGCTGCTGTTGGTTGCTTACGTGCTTTAAGCACAATCCTTGAGTCCATTAGCAGTCT
TCCCCATCTTTTTATCCAAATAGAGCCCACTTTGTTGCCTATTTTGCGCAGGATGTTGAC
TTCAGATGGTCAAGATGTTTATGAAGAAGTTCTGGAAATAGTGTCCTATCTGACCTTTTA
CTCACCAACAATTTCTTTGGACATGTGGAGCTTGTGGCCATTGATGATGGAGGCTCTTAA
TGATTGGGCCATTGATTTCTTTGAGAATATTCTTGTCCCACTAGACAATTACATTTCTCG
TGGCACTGAACATTTTGTTACATGCAAAGATCCTGATTATCAACAAAGCTTATGGAAAGG
ACTGTCATCTGTTATGACAGACCAAAATATGGAAGATTCAGATATTGTGCCGGCACCCAA
GCTCATTGAAGTGTTTTTTCAAAACTGCAAAGGACAAGTTGATCATTGGGTTGAGCCATA
TCTCAGGCTTACGATTGATAGGCTCCGTCGATCAGAGAAGCCATATTTGAAATCTCTCCT
TGTACAAGTGATAGCTAACGTATTCTACTACAATCCTTCGTTGACACTTGCAATGTTGCA
TAAACTTGGAGTTGCGACCGAAATTTTCAATCTTTGGTTTGTCATGTTACAACAAGTGAA
AAAAAGCGGCAAGAGGGTGAACTTCAAAAGAGAGCATGATAAGAAAGTCTGCTGCTTAGG
ATTGACTTCACTTATTGGCCTTCCAGCTAATCATATTCCAGCAGAGGCTCTAGAACGCAT
TTTCAAGGCAACACTTGAGCTGCTTGTTGCATACAAGGAGCAAGTTGCAGAATCTAAGAG
GCAAAATGATGCTGCTGATGATGATGTGGATGAATTTGATGCTGATGAAGAAGAGAATGA
GGAGGATGAGGATGATGGGGAGATGGGGGTTGATGATGAAGATCAGGATGAAGTAAATAG
TCTTAATATACAGAAACTAGTACAGGCAAGAGGTTTCCAGCTCCATGGTGAGGATGATGA
TGATGATGATTCTGATGATGATTTTAGTGATGACGAGGAGCTGCAGACCCCGATAGATGA
GGTGGATCCATTTATCTTCTTTGTTGGAACCATCCAAGCTGTACAAGCATCGGACCCAGC
CAGGTTCCAGAACCTTATGCAGACACTGGATTTTCACTACCAGGCACTGGCTAATGGCGT
TGCTCAGCATGCCGAGGAAAGAAAAGTTGAAATTGAGAAAGAGAAATTGGAGAAATCAAA
TGCACAGTGATGAATGAGTTATAGCAATGGTTTGTTTGTCTTGAGTTTTGTTGCAGGCCA
GAGTACCTGTGATTTGGTGATCGCAGGCAAATCAGTTTTTGCAGCCTTGGTCTACTTGTT
TTTGGAGGCCTGAGGCACACAGTTCTTGGAATAGAAGAATCGGACAACCGAACCATCGTG
GATAATCTCTTGCAGCCTTGGTCTATTTGTTTATGGGTGGTGCGAGCCCTACAGATGATA
CTACACACTTGTTATGATGCTGTTTTGGTCCTGAGCTTCGGCTCCGTTTGGTCGGATGGA
ATTTGTTAAATGAGCCCTTTGGGTGGGGCGCGTCCCCAAGTTCTCTTATAGCTAGGAAGG
TCCGGTGTAGAGTGTATATGATTGGGCGGTTATTGGTGGATTACCAATACGATGGTTTCA
TTTTTTTTCCTTCTGTCGTTGCAGGATTCAGTGAATCCATTTTTGTCCCTACGATTTGTT
GAACATCGCTGAAGCATGTCTCTGTATGGTTTGACAGAGGCTGGTGAAATAAACTTTGCC
TGCATCTGGTAACCTGGATCTGGTTATGTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_16874 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g27470.1	676	protein\|importin-7, putative, expressed
Brachypodium v1_2	Bradi5g05650.1	1029
Arabidopsis v10	AT2G31660.1	1040	\| Symbols: SAD2, URM9 \| ARM repeat superfamily protein \| chr2:13464519-13471353 FORWARD LENGTH=1040