barSeed - Barley Seed Development Database

Probe CUST_41234_PI390587928

Source Contig U35_20140

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41234_PI390587928	Hv_44K_v2	TCATCTTCACAAGATGTAGAAGAGTTGGTAGATGATCTACGGCCTGTTACTGCTCCTGTG	568	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.983	0.870	1.960	1.806	0.734	0.566
Raw	17.995	25.136	48.782	73.801	10.677	7.933

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55748.1	1422	2e-24	584 - 643	100	60 / 60	plus	ABC17003
MLOC	MLOC_55748.2	908	2e-24	762 - 821	100	60 / 60	minus	ABC17003
JLOC1	JLOC1_35995.1	1528	8e-25	610 - 669	100	60 / 60	plus
Harvest21	ABC17003	1320	3e-25	460 - 519	100	60 / 60	plus	ABC17003
Harvest35	U35_20140	850	3e-25	569 - 628	100	60 / 60	plus

Contig Sequence (850 bp)

>U35_20140 850 Hv_44K_v2
TATAAAATCCACAACCCTAGCCTGCCTGCCTGCCATGACGCGGGACGGCGTGCCACCGGC
GGCGCCTGCCGGCGGCGGTGCTGGGGACGGGCCGAGGCGATGCGGGCAGTGCGGGCACCA
CGGGCACAACGCACGCACGTGCACAGCGCGCCCCGTGAAGCTCTTCGGCGTGCGCATCGG
CGACAAGCCAATCAGGAAGAGCGTCAGCATGGGCAACCTCGCGCAGCTCGCCGAGGGCAG
CGGCGGTGCCAGGGCCGAGGGGTACGGCTCCGAGGGCGACGACGACAAACCCCACAGGAA
GCGAGGTGAGTCATGGTCAGAAGAGGAGCACAAAAATTTTCTACTTGGATTGAATAAATT
AGGAAAAGGTGATTGGCGTGGCATATCCCGTAATTATGTTGTCTCGAGGACGCCTACTCA
AGTTGCTAGCCATGCTCAGAAGTATTTCATTCGCCAAACAAATGTTAATAGGAGAAAGAG
AAGATCAAGCCTCTTCGATATGGTTATTGAGGATCCTGGTGACCAGTCACTCTCCCGTTC
ATCGTCACAAGAGATGCCGCTCTCCCGTTCATCTTCACAAGATGTAGAAGAGTTGGTAGA
TGATCTACGGCCTGTTACTGCTCCTGTGACACCACCCGCTCCTATGCCCGTGATAACATC
TGTTTCAGTCCGGCCACCAATGCCAGGAATGGCACCGCCTGCTCCTGTGCCTATGCTAAC
ATATGCATCCGCCCCGTCACCAGTTCTAGCAATGACACATCAACCTCAGGGCAATGAATC
GGTTGGTTCAAGCTCAACTGCTGGAGAAGCAGGGATGGTGATGCCACAAGTGATGCCCTC
ATATGCTTAT

Homology of Contig U35_20140 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g04840.1	384	1e-81	protein\|MYB family transcription factor, putative, expressed
Brachypodium v1_2	Bradi3g14830.1	393	9e-106
Arabidopsis v10	None