barSeed - Barley Seed Development Database

Probe CUST_41233_PI390587928

Source Contig U35_20141

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41233_PI390587928	Hv_44K_v2	TGCACCTTCTGAAGTATAAGATGCACAGTTTGTTGTGATGAGGTAAGGGATGAGCTTATC	782	GeneList: blue MasterList: Transcription_factors_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.628	1.261	1.222	0.929	0.318	0.357
Raw	112.695	136.848	116.712	139.079	17.856	20.404

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_35995.1	1528	2e-21	1411 - 1470	97	59 / 61	plus
Harvest21	ABC17003	1320	3e-25	1261 - 1320	100	60 / 60	plus	ABC17003
Harvest35	U35_20141	842	3e-25	783 - 842	100	60 / 60	plus

Contig Sequence (842 bp)

>U35_20141 842 Hv_44K_v2
TTCCTGACGATACTGTTTGCTCCGTTGTTGCATTAGTTTGGTGATGACTTGTTAGGATTT
TGGCTGGTGATGGGAACATGAGGTGGATTTCTACAGGCATCTGAATGTGGTGTTCCTTTT
TTGAATTTTGACACAGTTTCAAGACAAAGTCATCCGAGCGGACATAGTCTAGCTACTTAG
GTAGCCATCTCATATGTTGGCAGTATAAGCCGCTGTTGATGGACCGTTGAGCGTGGAAAC
CTGCCTGGAAACCCAGGAGCGGCCGCTCCATGATGATTCCTGCACCTCACTATGTCCAAG
CAGTTTTTCCGTTTCCATACTATAGCTATGCTCCAGTGTTCTATGGGCCGCCAGTCTCTA
TGCAAGCATCATCATCAGGTACAGTACAAGTATCACATGAGCCTGTCAGGCCTGTTGCCG
TCCACTCAGTTCCCCCGGTAAATGTCGAAGACCTGTACAACATGTCCCAACTGAACCTGA
AGGGTGACTCAAGTAGCAATGGTGTTGCGCCTAACTTGCCGTTGCCTCCAAATCCGAATG
GGAGACCAGAGAGGCAATCTGCTTTCCATGGAAAAGGGCCTGGGAACGGCTCATCAAACG
GACCAATACCGACAAAATGATTCTGTGGCTCGACCTTCTTTAATGTGTATGTAACCCTTA
GCTATGATAGTAAAATCATGATATAGCTTTCTTGGTCATGTTCCGATAGTAAATTTACTG
TTAGTCTGTCATGAAGGTTGCATTTGTGTTTTGCCCAAATTCACGTTGATTCTCTCATTT
TTTGCACCTTCTGAAGTATAAGATGCACAGTTTGTTGTGATGAGGTAAGGGATGAGCTTA
TC

Homology of Contig U35_20141 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None