barSeed - Barley Seed Development Database

Probe CUST_41230_PI390587928

Source Contig U35_20144

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41230_PI390587928	Hv_44K_v2	AGAAAGTACTAGTACCTCTGTACCATAATGTAAGACGTTTTTGCAGTTCAATACATAGAC	784	GeneList: yellow MasterList: Starch_synthesis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.145	1.940	0.928	0.982	0.504	0.559
Raw	213.637	306.862	126.306	214.977	38.333	45.848

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_41996.1	1433	1e-22	1355 - 1413	98	59 / 60	plus
Harvest21	ABC13137	557	5e-23	30 - 88	98	59 / 60	minus	ABC13137
Harvest35	U35_20144	873	3e-25	785 - 844	100	60 / 60	plus

Contig Sequence (873 bp)

>U35_20144 873 Hv_44K_v2
GTTCATTGTTCCCTCTATATTTGAGCCATGTGGCCTCACTCAGATGATAGCCATGAGATA
TGGCTCTGTGCCAATTGTTCGAAAAACTGGTGGATTGAATGATAGTGTCTTTGACTTCGA
CGACGAAACAATACCCGTGGAGGTCCGGAACGGCTTTACATTTGTCAAGGCCGACGAGCA
GGGTCTAAGCAGCGCGATGGAAAGGGCGTTCAACTGCTACACGAGGAAGCCCGAGGTCTG
GAAACAGCTTGTGCAGAAAGACATGACGATCGACTTCAGCTGGGACACTTCGGCTTCACA
GTACGAAGACATATACCAAAAGGCAGTGGCTCGAGCGAGGGCAGCAGCATGAGTGAACAC
ACACACGGTGGTTGGTTCCCTGACGCCTCCAAGCTCTCTCCCCCTGGCCCTGCCCTTCCA
ACACAAACAGCGCAAGATGAAATCATCAAGGGATCATGAAAACGGAATTATATAGGAAGA
AGCTCCATGCTCTCGACGCACATTTCAGGTATCAGCGCGGCTGTTATATGCGCTGTTTTA
TTGAAGACAGAACGGGGGCGAAAAATGGGGTGGCTACCATGAACTGTTAAGATCGTAGTA
CGTGCACTGTTGTTGGCATAAATTGGTGTAAATTGTAGGATGTATATTTTGTCGAGGGGT
TGTAATTGAACTGTATATGTGCGGTGCAGACTGCAGAGTCGTATTATTATGCAGAAATCT
TATGGTCCGTGAGATGAAAGGAGCAAGAAATTCAGAGACCTGAACCCTAAGCATCTGTCA
TGTTAGAAAGTACTAGTACCTCTGTACCATAATGTAAGACGTTTTTGCAGTTCAATACAT
AGACTTTCTTTTCTTTGAAAAAAAAAAAAAAAA

Homology of Contig U35_20144 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g45720.2	874	2e-55	protein\|starch synthase, putative, expressed
Brachypodium v1_2	Bradi2g18810.1	922	2e-64
Arabidopsis v10	None