barSeed - Barley Seed Development Database

Probe CUST_41225_PI390587928

Source Contig U35_20149

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41225_PI390587928	Hv_44K_v2	CTGTATAGTTTTTGGAGGTCGTCTGTATAATTATTTTGTACGTTGTATTGAACCCACAGA	712	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.518	0.735	0.403	1.914	1.837	1.497
Raw	15.600	35.430	15.955	113.278	39.956	36.507

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366348	696	2e-24	620 - 679	100	60 / 60	plus	ABC11751 ABC29374
MLOC	MLOC_57655.1	890	7e-23	685 - 744	98	59 / 60	plus	ABC11751 ABC29374
MLOC	MLOC_57655.2	1251	7e-23	861 - 920	98	59 / 60	plus	ABC11751 ABC29374
JLOC1	JLOC1_37395.1	1038	4e-23	838 - 897	98	59 / 60	plus
Harvest21	ABC11751	814	1e-23	713 - 772	98	59 / 60	plus	ABC11751
Harvest35	U35_20149	814	3e-25	713 - 772	100	60 / 60	plus

Contig Sequence (814 bp)

>U35_20149 814 Hv_44K_v2
GCGCACCTTCCCCACGCGTCGCCGTCCGCCCGTCCATCCACCGGCCTATATCTCCCTCCT
CCTCCTCCTCCTCCATTCCTTCTCAGCTCAGCTCGTCGTTCTACTCAATCTTCTCAGAGC
TCAGCTTTGCTTGCCGGTCGATCTTGAGGTCGTGGGGATGGGCATCCTGGACGCGGTGAC
GGAGATGTGCGCGTGCCCGAGGGTGCGCGCGCGGCGGCGCATGAAGAAGCGGCCGCAGCT
GGAGACGGTGGAGATGAAGGTGAGGATCGACTGCGAGGGCTGCGAGCGCCGCATCCGCAA
GGCCGTCGACGGCGTCCGTGGGGTCACCGGCGTCGAGGTGCTCCCCAAGCAGAACAAGGT
GGCCGTCACCGGGTACATCGACGACCCGGCCAGGCTGATGCGGCGGGTGGCGCGCAAGAC
CGGCAAGAAGGTGGAGCCGTGGCCGTACGTGCCCTACGACGTCGTGCCGCACCCCTACGC
CCCCGGCGCCTACGACAAGAAGGCGCCCCCCGGCTACGTCAGGAACGTCGTCGCCGACCC
CGACGCCGCGCCGCTCGCCAGGGCGTCCTCCGCCGAGGTCAAGTACACCTCCGCCTTCTC
CGACGAGAACCCCAACGCCGCATGCGCCGTCATGTAGGTAGTCCGTGGCTCCGTGCACGT
AGCCATCTTCTGCCCATGGCTTTCCTTCTGTTAACTAAGCTTGTGCTTAGATCTGTATAG
TTTTTGGAGGTCGTCTGTATAATTATTTTGTACGTTGTATTGAACCCACAGAATGAAATT
GTATAAATTACTTACTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_20149 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g70700.1	159	2e-62
Arabidopsis v10	None