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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_41209_PI390587928Hv_44K_v2CTACCACCCGCAGCTGTTTGTTTGCACAATGTGATATGCATGTCCACTGGTTTCAAAAAA764GeneList: blue
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.6601.4251.0450.8580.3670.306
Raw 4438.3605899.9933900.5305065.300751.190686.439



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
Harvest21ABC122058353e-25765 - 82410060 / 60plusABC12205
Harvest35U35_201518353e-25765 - 82410060 / 60plus



Contig Sequence (835 bp)

>U35_20151 835 Hv_44K_v2
TAAACCCTTGTTTCCGTTCCCGTGGATCGGTCCCAGCCGCCGCCGCCGCCCCGCCCGCCG
GCATCTCCTCTTCCCCCGACGAGACCCGTCCCGCTTCAGGTCCGCCATGCTTTCCCTGTC
GAGGACGCTCGCGAGGCGGCTCTTCTCCACCGCGCCCGAGGGCGCCTCCGCCGCCGCATC
GACGTCGGTGGCGAGGAAGGCGCAGAACCCGCTCGAGGAGTTCTTCGAGGTCGAGCGGAG
CACCGCGGACGACCAGCCCGCGCCCCACTACGGTCGTGGCTGGAAGGCCTCTGAACTGCG
CTTGAAATCCTGGGACGACCTTCATAAGCTATGGTATGTGCTGCTAAAGGAGAAGAACAT
GCTCATGTCCCAGCGCCAGATGCTAGCTTCAGAGAGTATGGGTTTCCCAAACCCGGAGCG
CATTTCCAAGGTGAAGAGATCGATGTGCCGGATCAAGCACGTGCTGACGGAGCGGGCCAT
AGCGGACCCTGACCCGAGGAGGACCGCGGAGATGAAGCGGATGATCAACGCCATGTGATC
GACCCACGCCACGCCGCGCTTCAACTGTCCGTAAGCAGCAGCCGTAGCAGCATTAGCATC
TATCTACTGAAAAGAAAGAATTTGCTTGGTTCCCTTCTTGTGTTTTATGCCTGCCCCTGT
AAGATGCATAAGACCGGCAATCCTTGAGTCACCCGTGTAACGCCATCCGCCCCCCGACAG
CTCCACGGATGAACGTCGACGGACTTGTGTTCGAATAATCATGACTACCACCCGCAGCTG
TTTGTTTGCACAATGTGATATGCATGTCCACTGGTTTCAAAAAAAAAAAAAAAAA



Homology of Contig U35_20151 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os06g03790.11464e-77protein|39S ribosomal protein L47, mitochondrial precursor, putative, expressed
Brachypodium v1_2Bradi1g49670.11491e-81
Arabidopsis v10AT1G07830.11442e-60ribosomal protein L29 family protein | chr1:2422549-2423392 FORWARD LENGTH=144