barSeed - Barley Seed Development Database

Probe CUST_41207_PI390587928

Source Contig U35_20153

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41207_PI390587928	Hv_44K_v2	CTTGAGGATGCTGTTATGCTTGAGACTTATCATGATCAACTCATGCAAAGTTTTCCTAAA	1778	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.200	1.215	1.168	0.939	0.355	0.324
Raw	1666.280	2636.353	2229.257	2758.050	376.529	371.077

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36655.2	3882	9e-22	54 - 111	98	57 / 58	minus	ABC09290 ABC14269
JLOC1	JLOC1_23636.1	3990	5e-22	3772 - 3829	98	57 / 58	plus
Harvest21	ABC14269	1300	3e-25	1227 - 1286	100	60 / 60	plus	ABC14269
Harvest35	U35_20153	1852	3e-25	1779 - 1838	100	60 / 60	plus

Contig Sequence (1852 bp)

>U35_20153 1852 Hv_44K_v2
ATGTTGGTATTGTGGAATATGCATACCAGCGGACGAAGAATTTTGAGAGGCTGACTTTTC
TGTATCTTATTACTGGTTACATGGACAAGGTGGGCTTCATGTGCAAAATTGCTGGACAGA
ATAACAATTTGATGGGTCAGTTCCACAATGCATTATATCTTGGGGATGCTAGGAAGCGAG
CTGAGATCCTGGAGAATGCTGGACAGCTTCCTCTAGCCTATGTTACTGCTGCCACTCATG
GGCTCACTGAAATTGCTGAAAGGCTTGCTGCTGAGTTGGGTGAGAATGTTCCTTCTCTAC
CCGAGGGAAAAACTCGCTCACTTTTAATTCCGCCGGCACCTCTCATATCCAGCGTTGATT
GGCCATTGCTCCGGGTGATGCGTGGCATATTTGAGGGTGGGCTGGATGCTACTGGGAGAG
CAGAAGTAGAGGAAGACGATGAAGCTGCTGGTGCTGACTGGGGTGATGAGGACTTGGATA
TTGTGGATGCAAGTGATGCATTAGCAAATGGGGGTGATGGTTTTGATCCTGAGGAGGGTG
AAGCGAATGAGGAGGATGGCGAGGAAGGTGGTTGGGATCTTGAAGATCTGGAATTGCCTG
AATCAGAGACCCCCAAAGCTGCTGGAAATGCTCGCTCTACTGTGTTTGTTGCTCCTGCAC
CAGGAATGCCTGTCAGCCAAATTTGGACTCAGAAATCTTCCCTTGCCGGGGAGCATGCAG
CAGCAGGAAACTTTGACACTGCAATGAGGTTGCTCAGCCGCCAGTTGGGCATCAAGAACT
TTGCTCCCCTGAAGCCCTTGTTTCTTGATCTGCACATGGGCAGTCATTCATATCTTCGCG
CACTTGCAACTGCTCCCGTTATATCAATTGCTGTTGAGAAAGGCTGGAGTGAGTCATCGA
GTCCTAACGTGAGGGGCCCTCCTGCACTAATTTTCACCTTCTCACAAATGGAAGACAGAC
TCAAGGCAGCCTACAAAGCCACAACCGAGGGGAAGTTCCCAGAAGCGCTGAGACAATTCC
TCAGCATCTTGCATACCATTCCCCTTATTGTCGTCGACTCACGGAGAGAAGTTGATGAAG
TGAAGGAGTTGATCGAGATAGTGAGGGAGTATGTTCTTGGTCTAAGAATGGAACTCAAGA
GGAAGGAACTGAAGGACAACGTCAACCGGCAACAGGAGCTGGCGGCCTACTTCACCAACT
GCAAGCTCCAGAGGGTTCACATGAGACTCGTGCTCTCGAACGCCATGGCTCTATGCTACA
AGCAGAAGAACTTCGCGACTGCCGAGCACTTTGCGAGGCTGCTCCTCGAGAACAGCCCCA
ACGAGGTCCAGGTGAAGAAGGCTCGGCAGGTGCAGCAGCAGTGCAACGGCAAGCAGGACA
GCCATGAGCTCAACTACGACTACAGAAATCCGTTCGTCGTCTGTGGCTCGACGTATGTCC
CCATCTACCGCGGCCAAAAGGACATCTCGTGCCCTTACTGCGGATCCCGGTTTGTTCCTG
CCACGGAAGGGCAGCTTTGTACCATATGCGAGCTGGCGGTGGTCGGCGCGGACGCCTCGG
GCCTCCTGTGCTCCCCTACACAGACGAGATGAGCGGAAGAGGCTAGTCGTTAGAGCTCCC
CTATATTCTTTCTAGTCTCGTAAAGCCCGTCTTGTCTTATATTTTACCAGGAGGTTTACT
GATTGTGTAAGGAATAAGTATAATAGTACATGGTTTTGTCGGAGTTCTTCTCATACTTTT
TTCTATCTCCATACCATATACCCCCGGNTTTTGCTTGCCTTGAGGATGCTGTTATGCTTG
AGACTTATCATGATCAACTCATGCAAAGTTTTCCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_20153 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os09g04110.2	1219	protein\|coatomer alpha subunit, putative, expressed
Brachypodium v1_2	Bradi1g78470.1	1219
Arabidopsis v10	AT1G62020.1	1216	Coatomer, alpha subunit \| chr1:22919814-22923728 FORWARD LENGTH=1216