barSeed - Barley Seed Development Database

Probe CUST_4119_PI390587928

Source Contig U35_16772

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4119_PI390587928	Hv_44K_v2	TTTGTGAACTCTGATTCACCCATTGAAGCTCAGTCTTGCAGGGGAATGAAACTGCATTCG	699	GeneList: paleturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	14.767	6.910	1.400	0.704	0.276	0.449
Raw	4465.923	3530.219	604.880	509.706	65.909	117.313

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_2050.1	2428	9e-22	41 - 98	98	57 / 58	minus	ABC12999
MLOC	MLOC_2050.3	2172	9e-22	22 - 79	98	57 / 58	minus	ABC12999
MLOC	MLOC_2050.2	2224	9e-22	41 - 98	98	57 / 58	minus	ABC12999
JLOC1	JLOC1_1236.1	2084	5e-22	2006 - 2063	98	57 / 58	plus
JLOC1	JLOC1_1237.1	2428	5e-22	42 - 99	98	57 / 58	minus
Harvest21	ABC12999	797	2e-22	700 - 757	98	57 / 58	plus	ABC12999
Harvest35	U35_16772	795	3e-25	700 - 759	100	60 / 60	plus

Contig Sequence (795 bp)

>U35_16772 795 Hv_44K_v2
GGTGCACCAGGGCACGGTCCTGCCGCTGCAGCGCGGCGGCACCATCTCCCGCGACGCGCG
CGCGACGCCGTTCACGCTGGTGGTGGCGTTCCCGCTGGGCGCGGCGGACGCGGACGCGGA
GGGCGCCGTGTACGTGGACGACGACGAGCGGCCGGCCATGGTGCTGGCGGAGGGGCAGGC
GACGTACGCGCGGTTCCACGCGGCCGTGCGCGGCGGCAAGGAGGTGACTGTGCGGTCGGA
CGTGGCCATGGGGAGCTACGTCATGCACAAGGGGCTCGTCATCGAGAGGATCACGGTGCT
GGGGCTGCACGGCACCGGCAGGGACCTGGCCATCCGGGTCGACGGCGCGGACGACGACGC
CACCGCCGTCGCCACGTCGAGCCCCTACTTCTTGGCCGCGGACGCGCAGGTGATGCACCA
AGGAGAAGAGGACGCCGTGGAGGGCGAGAAGAGGGGCGTGACGATGGAGGTTGGCGGGCT
GGAGTTGCCGCTGGGGAAGAGCTTCACCATGACATGGAACATGCACATCGAAGCATAGGA
GAATCGAGCTGCATTTGCCTCTGCTTCCGTCTGCATGCGCCTTCTTCGTTCGACTCGTCG
TCGTCGTGTCTAATTTAAATTTATAGAGCTTAAAAAGTAGTTCATCGTGCTTGAGTCGGT
TATGTAACTTGTGTGGGGGTTGGTTACCCTCGAACACCATTTGTGAACTCTGATTCACCC
ATTGAAGCTCAGTCTTGCAGGGGAATGAAACTGCATTCGGCCGTTTCGCTTCTTCCCAAA
AAAAAAAAAAAAAAA

Homology of Contig U35_16772 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g03950.1	933	7e-65	protein\|glycosyl hydrolase, family 31, putative, expressed
Brachypodium v1_2	Bradi2g02070.1	940	5e-72
Arabidopsis v10	None