barSeed - Barley Seed Development Database

Probe CUST_41197_PI390587928

Source Contig U35_32137

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41197_PI390587928	Hv_44K_v2	AGCTTCCATCTCCACAAGTTCCCGGTCATGTCCAAGAGCCGCAAGATCAGCCGCATGCTT	156	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375511	2332	2e-24	195 - 254	100	60 / 60	plus	ABC18771
MLOC	MLOC_3906.4	2140	2e-24	630 - 689	100	60 / 60	plus	None
MLOC	MLOC_3906.3	1924	2e-24	524 - 583	100	60 / 60	plus	None
MLOC	MLOC_3906.5	1977	2e-24	153 - 212	100	60 / 60	plus	None
MLOC	MLOC_3906.1	2312	2e-24	608 - 667	100	60 / 60	plus	None
MLOC	MLOC_3906.2	2204	2e-24	500 - 559	100	60 / 60	plus	None
JLOC1	JLOC1_2355.1	2157	8e-25	456 - 515	100	60 / 60	plus
Harvest35	U35_32137	375	3e-25	157 - 216	100	60 / 60	plus

Contig Sequence (375 bp)

>U35_32137 375 Hv_44K_v2
ACAGCTCAACGAGACAGGGACGAGTAGCAGCGGCAGCTGGGGCGGCCTGCCATGTCGTCT
TCGTCCGCGGCGCGGCACGGCCCGTCCAGGGGCGGCGAGGCGTGGTTCTGCACCACCGGG
CTGCCCAGCGACGTTGTGTTCGAGGTGCAGGACATGAGCTTCCATCTCCACAAGTTCCCG
GTCATGTCCAAGAGCCGCAAGATCAGCCGCATGCTTGCCGAGCAGGACGAGCAGCGTCCG
CCGGTTCAGCGGCCGCGGCGGCAACGACGTGGGAGCTCCGGAGGCAATGCCGAGGAGCAT
GTTGCGGCGGAAACAGAGATTGAGGAAGCAGAGGAGGAAGAGGAGGAGGACCAGCGGCAG
GATGTTAGGATGGAA

Homology of Contig U35_32137 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None