barSeed - Barley Seed Development Database

Probe CUST_41194_PI390587928

Source Contig U35_44112

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41194_PI390587928	Hv_44K_v2	TTGGAGCGCCTATGCCTGTTGTTCCAGAGCAGCGGAAGCAGCCTTATCGATCGCATGAGA	484	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59486.1	2350	2e-24	1064 - 1123	100	60 / 60	minus	ABC22994
JLOC1	JLOC1_38714.2	6554	8e-25	1294 - 1353	100	60 / 60	plus
JLOC1	JLOC1_38714.1	5808	8e-25	539 - 598	100	60 / 60	plus
Harvest21	ABC41592	545	3e-25	485 - 544	100	60 / 60	plus
Harvest35	U35_44112	545	3e-25	485 - 544	100	60 / 60	plus

Contig Sequence (545 bp)

>U35_44112 545 Hv_44K_v2
TCGGACAAACTACACAAAGACCCGTACCCCAACGAGCCAAGCGGGTGGAGCTGTCTGCCA
AGCTGGGGCTGACGGACAGGCAGCTGCAGATGTGGTTCTGCCACCGGAGGCTCAAGGACC
GCAGGCCGCCCGCCAAGCGGCAGCAGCAGCAGCAGCTGGACGAAGAGGTTGCCGTGCCCG
TCATGGCGCCCCCGCCTGTGCTGCACCACTCGCTGCCACACCCACACACCGAGCTTCTTG
NNGCCCTGCAGCAGCTCCCGCAGAGGGCCTGGCCGCTCGTCGGCCGTGCCTAGGATTTCT
GCCCCGGAGATCGACAGGAGGTACTACGAGTCGCACCAGATTATGCTGCCTCCGCAGGCA
CCAGTGCAGCTCACACGAGCCGCACACCGGGCGATCGAGACCGTGCAACAGCTGATAGGA
GAGCCGCTGAGGGAGGACGGGCCAGTTCTTGGTGATCACTTTGATCCGCTCCCACCCGAC
GCATTTGGAGCGCCTATGCCTGTTGTTCCAGAGCAGCGGAAGCAGCCTTATCGATCGCAT
GAGAC

Homology of Contig U35_44112 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None