- Probe CUST_41192_PI390587928
- Source Contig U35_44116
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_41192_PI390587928 | Hv_44K_v2 | GTCCCCTGTAACTTAACTACTGGACAAGAAAGGGAAGAAATTGAAGGCGCAAAGCATAGT | 292 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.969 | 1.533 | 1.111 | 0.730 | 0.489 | 0.507 |
| Raw | 65.762 | 75.123 | 50.549 | 50.346 | 12.644 | 13.714 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_66915.2 | 5588 | 2e-24 | 3893 - 3952 | 100 | 60 / 60 | plus | ABC15850 |
| MLOC | MLOC_66914.5 | 1748 | 2e-24 | 667 - 726 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_66914.3 | 2115 | 2e-24 | 851 - 910 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_66914.4 | 2118 | 2e-24 | 851 - 910 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_66914.2 | 1786 | 2e-24 | 851 - 910 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_66914.6 | 1224 | 2e-24 | 618 - 677 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_66914.1 | 1545 | 2e-24 | 852 - 911 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_44146.5 | 1075 | 8e-25 | 564 - 623 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_44146.4 | 1245 | 8e-25 | 573 - 632 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_44146.3 | 1183 | 8e-25 | 575 - 634 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_44146.2 | 1089 | 8e-25 | 575 - 634 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_44146.1 | 1294 | 8e-25 | 625 - 684 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC41603 | 355 | 3e-25 | 293 - 352 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_44116 | 355 | 3e-25 | 293 - 352 | 100 | 60 / 60 | plus |
Contig Sequence (355 bp)
>U35_44116 355 Hv_44K_v2 TTGCCTTCTCTCCTATTCTGATCTACATCCCTTGGTTAATTCTGCCAATTTGAGATTTTG GAGGGGCAACCACAGCTCTGGGAAGTTCGATTTCACTGATATGACGCATCCTCATTTATG GTATCCGAATGCCCGAGAAAAGAAGCGCAATGTATTTTTGCATGTTGGTCCTACAAACAG TGGGAAAACACATAATGCTCTCAAACGATTAGAAGCAAGCTCTTCAGGTGTGTACTGTGG ACCTCTAAGATTGTTAGCACGGGAAGTAGCAGAAAGATTGAACAAAGCTAGTGTCCCCTG TAACTTAACTACTGGACAAGAAAGGGAAGAAATTGAAGGCGCAAAGCATAGTTCA
Homology of Contig U35_44116 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g53500.1 | 580 | 3e-55 | protein|helicase conserved C-terminal domain containing protein, expressed |
| Brachypodium v1_2 | Bradi1g08847.1 | 573 | 3e-61 | |
| Arabidopsis v10 | None |