barSeed - Barley Seed Development Database

Probe CUST_4118_PI390587928

Source Contig U35_16773

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4118_PI390587928	Hv_44K_v2	TGCTTGTCTCATTGGGCTCCCTAAATTTAAGGATTTTTACAAGCTCAATGGGAAGCCGGT	632	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55372.3	1072	2e-24	674 - 733	100	60 / 60	plus	ABC05656 ABC46807
MLOC	MLOC_55372.2	1349	2e-24	974 - 1033	100	60 / 60	plus	ABC05656 ABC46807
JLOC1	JLOC1_35709.2	1069	8e-25	698 - 757	100	60 / 60	plus
JLOC1	JLOC1_35709.1	1195	8e-25	798 - 857	100	60 / 60	plus
Harvest21	ABC05656	1041	3e-25	633 - 692	100	60 / 60	plus	ABC05656
Harvest21	ABC46807	412	4e-24	355 - 412	100	58 / 58	minus	ABC46807
Harvest35	U35_16773	1046	3e-25	633 - 692	100	60 / 60	plus

Contig Sequence (1046 bp)

>U35_16773 1046 Hv_44K_v2
GCTCAACACTCCAGCTCCTATCTAGCGCAGCGCAGCTCTGTAGAGTGAGTGGAAATGGGC
GAGGAGGCCAATTGCAACGCCGTGATGGAGGCCGCCAACGGCAACGGCAACGGCAAGGTC
AAGGAGAACGGCCACGCCGTTGTGGCCATGCCGGACGTCAAGGCCGACGACGCCGTGGTG
GCGCCCGCCGACCCCCGGCTGCAGGGCATCTCCGACGCCATCCGCGTCGTCCCGCACTTC
CCCAAGCCAGGCATCATGTTCAACGACATCACGACGCTCCTGCTGCGGCCCGGGGTGTTC
AAGGACGCCGTGGACATCTTCGTCGAGCGCTACCGCGGCATGGACATCGCCGCCGTCGCC
GGGATTGAGGCGAGAGGGTTTATATTTGGCCCGGCGATTGCACTAGCCATCGGTGCCAAG
TTCATTCCGTTGCGTAAGCCTAAGAAACTCCCAGGTGAGGTGATTTCTGAGACCTATGTT
CTCGAATACGGAACTGATTGTCTGGAGATGCATGTTGGTGCTATCGAACCCCGTGAGCGG
GTTTTGATCGTCGATGATCTGGTTGCAACTGGTGGGACACTTTGTGCTGCTATAAATCTT
CTGGAACGTGCTGGAGCTGATGTCGTTGAGTGTGCTTGTCTCATTGGGCTCCCTAAATTT
AAGGATTTTTACAAGCTCAATGGGAAGCCGGTCTATGTACTGGTGGAGTCTCTGGAATAT
GAAAAATAAGAAACTTGTGACCAGGGACGCATCGTGGCTTCATCCTGCAGGTGAACGGTG
ATGATCCACAAGTCTGCGGCACATTGCTAAGGCTAGCTGCTACGCGTTAGGGAGGGAGTG
GGGGAGGTTAGGGAGCGGTACGTGAATGGATGGGTGTTAGTAGTCTTTGTAGGCTGAGTA
GTTTCTTCAAGAGTACTGAAGAGCTTCCTTGTTCTCGGGAAAAATGATCGTTAGCTGAAA
CGCGAGTCCTGTCGTTCTTCCATTGTTATTGGTTATTAATTATTAATTGTGTGGTTTTGA
TTTCAAAAAAAAAAAAAAAAACTCGA

Homology of Contig U35_16773 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g40010.3	214	6e-115	protein\|phosphoribosyl transferase, putative, expressed
Brachypodium v1_2	Bradi3g48670.1	228	4e-114
Arabidopsis v10	AT1G80050.1	192	8e-86	\| Symbols: APT2, ATAPT2, PHT1.1 \| adenine phosphoribosyl transferase 2 \| chr1:30111708-30113261 REVERSE LENGTH=192