barSeed - Barley Seed Development Database

Probe CUST_41178_PI390587928

Source Contig U35_32143

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41178_PI390587928	Hv_44K_v2	AATGGCACTGGAATCGACAAGCCAGATTACCTGGCTACGGTGGACGTCGACCCCAGTTCA	331	GeneList: darkgrey MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.088	0.241	1.306	2.372	1.096	1.329
Raw	13.574	57.862	274.740	794.713	136.130	172.254

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363526	2033	7e-23	331 - 390	98	59 / 60	plus	ABC02837 ABC40926
MLOC	MLOC_55348.2	1639	7e-23	312 - 371	98	59 / 60	plus	ABC02837 ABC40926
MLOC	MLOC_55348.1	1861	7e-23	492 - 551	98	59 / 60	plus	ABC02837 ABC40926
JLOC1	JLOC1_35688.1	2341	4e-23	377 - 436	98	59 / 60	plus
Harvest21	ABC40925	498	1e-23	305 - 364	98	59 / 60	plus
Harvest21	ABC02839	523	1e-23	293 - 352	98	59 / 60	plus
Harvest21	ABC02837	1947	1e-23	229 - 288	98	59 / 60	plus	ABC02837
Harvest35	U35_32143	451	3e-25	332 - 391	100	60 / 60	plus
Harvest35	U35_898	647	1e-23	255 - 314	98	59 / 60	plus
Harvest35	U35_896	498	1e-23	305 - 364	98	59 / 60	plus
Harvest35	U35_894	2089	1e-23	229 - 288	98	59 / 60	plus

Contig Sequence (451 bp)

>U35_32143 451 Hv_44K_v2
CTGCTCCCTCTGCCCCTCTCGCAGAACGCAAGAGAAAAACCAACAGCTCGCTGCCTCCGG
TGAGTCAGCACAGCACCCAGCCCGGCTCCCCCCTGCTTCTCTCCGGCACGGTGGCTCACC
GTTTTCCTTCTTCCAGGGGGTTCGTTCAGGCGTCCTGAGATCACACATGGCCGCGGCGGT
GGCAGAAGCGGCGGTGCCGGCGCCGGCGAAGGCGAACGGCGCCGGCGCCGGTGCCGGGTG
CTGCGCGGCGAAGGGCCCCGGGTACGCCACGCCGAGGGAGGCCATGGAGAAGGGCCCGCG
CGAGGGGCTCCTCTACGTCACCTGCGTCTACAATGGCACTGGAATCGACAAGCCAGATTA
CCTGGCTACGGTGGACGTCGACCCCAGTTCAGCGACGTACTCCCAGGTGATCCACAGGCT
CCCGGCCACCCACATCGGCGACGAGCTGCAT

Homology of Contig U35_32143 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None