barSeed - Barley Seed Development Database

Probe CUST_41173_PI390587928

Source Contig U35_44122

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41173_PI390587928	Hv_44K_v2	CATCTACTCCTACCAACAAATGGGTTTACTGGGACAATTCCTCCATCCCTTGGTCATTAG	296	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37499.7	3456	2e-23	673 - 730	100	58 / 58	plus	ABC16778 ABC24048
MLOC	MLOC_37499.3	4181	2e-23	1069 - 1126	100	58 / 58	plus	ABC16778 ABC24048
MLOC	MLOC_37499.1	3759	2e-23	965 - 1022	100	58 / 58	plus	ABC16778 ABC24048
MLOC	MLOC_37499.6	3779	2e-23	919 - 976	100	58 / 58	plus	ABC16778 ABC24048
MLOC	MLOC_37499.8	3438	2e-23	578 - 635	100	58 / 58	plus	ABC16778 ABC24048
MLOC	MLOC_37499.4	4063	2e-23	962 - 1019	100	58 / 58	plus	ABC16778 ABC24048
MLOC	MLOC_37499.2	4579	2e-23	1684 - 1741	100	58 / 58	plus	ABC16778 ABC24048
MLOC	MLOC_37499.5	4050	2e-23	938 - 995	100	58 / 58	plus	ABC16778 ABC24048
JLOC1	JLOC1_24284.6	4199	1e-23	933 - 990	100	58 / 58	plus
JLOC1	JLOC1_24284.5	4192	1e-23	937 - 994	100	58 / 58	plus
JLOC1	JLOC1_24284.4	4221	1e-23	966 - 1023	100	58 / 58	plus
JLOC1	JLOC1_24284.3	4250	1e-23	984 - 1041	100	58 / 58	plus
JLOC1	JLOC1_24284.2	4239	1e-23	984 - 1041	100	58 / 58	plus
JLOC1	JLOC1_24284.1	4232	1e-23	966 - 1023	100	58 / 58	plus
Harvest21	ABC41617	380	3e-25	297 - 356	100	60 / 60	plus
Harvest35	U35_44122	380	3e-25	297 - 356	100	60 / 60	plus

Contig Sequence (380 bp)

>U35_44122 380 Hv_44K_v2
CAGCTACAATCATGCAGTTTATCTTGGGGCTCATTGTTTGCAATGGACATATCTTGATCT
GTGGCTTCCTGTATGGAAATGAGACAGACCAATCGTCACTGCTTGAATTCAAGAATGCAA
TCACCCTCGATCCAAAGCAATCCTTGATGTCCTGGAATGACAGTACCCACTTTTGCAATT
GGGAAGGTGTTCATTGNNNGATGAAAAATCCATACCGTGTCACTTCTCTTAACCTTACAA
ATCGAGGTTTAGTCGGGCAAATCTCTCCTTCACTTGGAAATCTTACATTCCTAAAACATC
TACTCCTACCAACAAATGGGTTTACTGGGACAATTCCTCCATCCCTTGGTCATTAGCATN
NNCTTNAAAACCTATACCTG

Homology of Contig U35_44122 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g24410.1	1020	2e-63
Arabidopsis v10	None