barSeed - Barley Seed Development Database

Probe CUST_41170_PI390587928

Source Contig U35_44125

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41170_PI390587928	Hv_44K_v2	ATATTCTCGTGGATTGTTGGGAACGTCCTCTATATTCGAAATATGCCTTTCTAGGAGCAT	317	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_26710.1	2625	2e-24	212 - 271	100	60 / 60	minus	None
JLOC1	JLOC1_18128.1	2270	8e-25	215 - 274	100	60 / 60	minus
Harvest21	ABC53101	492	3e-25	318 - 377	100	60 / 60	plus
Harvest21	ABC41621	377	3e-25	318 - 377	100	60 / 60	plus
Harvest35	U35_44125	377	3e-25	318 - 377	100	60 / 60	plus

Contig Sequence (377 bp)

>U35_44125 377 Hv_44K_v2
AGTTTTTTTTTCGGATGATGAGGATGAGCCAGCCGATCCTAACATAATTTTGGAGGAGCC
GGACGACGAAGCCTCAAAATCAGATAAAGATGTCTCCGACGCGACCGGACTTCCACTAGA
TTTTTATAGGGGTCAGGAGGGAAAAGATATGCTGTTTTCTATCAGTCCCAAGCGGATACT
CCCCAGCTTCCACGGTCCGCTTACCGAGGAAGAGATGCGGGAGGACCCAGGGCCAGAGCA
AGTTGGGTTGGGGTATAGAGCCGTAAGCGCGGTGGGGGTGACAGAGGATGTGCTCGTACG
GTTCATAGTTGGGTATGATATTCTCGTGGATTGTTGGGAACGTCCTCTATATTCGAAATA
TGCCTTTCTAGGAGCAT

Homology of Contig U35_44125 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None