barSeed - Barley Seed Development Database

Probe CUST_4116_PI390587928

Source Contig U35_16775

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4116_PI390587928	Hv_44K_v2	AGAGTTGGTGGTGTAGTATGTGTGATGAAACATTGTAATTTAACTGCATTGGCATTCTTA	1791	GeneList: bisque4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.273	2.108	1.396	0.805	0.281	0.306
Raw	2661.943	7018.200	3907.393	3605.900	436.123	520.982

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65103.3	2308	2e-24	2231 - 2290	100	60 / 60	plus	ABC06065 ABC06066 ABC06067
MLOC	MLOC_65103.1	2505	7e-23	82 - 141	98	59 / 60	minus	ABC06065 ABC06066 ABC06067
MLOC	MLOC_65103.2	2413	7e-23	82 - 141	98	59 / 60	minus	ABC06065 ABC06066 ABC06067
JLOC1	JLOC1_42815.2	2534	4e-23	2305 - 2364	98	59 / 60	plus
JLOC1	JLOC1_42815.1	2626	4e-23	2397 - 2456	98	59 / 60	plus
Harvest21	ABC06067	1900	3e-25	1792 - 1851	100	60 / 60	plus	ABC06067
Harvest21	ABC06065	149	3e-25	43 - 102	100	60 / 60	plus	ABC06065
Harvest35	U35_16775	1900	3e-25	1792 - 1851	100	60 / 60	plus

Contig Sequence (1900 bp)

>U35_16775 1900 Hv_44K_v2
CTAACCCTCCTGGTGGAGGGGGTAGAGGAGGGTTGATGTNAGAAGAACAGACGATATCGG
CACTTTCACTACTTGGTTCATACGGTGAAAATGTTAGCAGAAAATCCCACACGCCTTCTG
CTATTGTTATTGGTGGTGGGTTTGCAGGCATTGCTGCTGCAAATGCGCTCAGGAGTGCGT
GGTTCGAGGTCGTTCTTCTGGAATCCCGTGACCGGATAGGTGGCCGAGTTCACACTGACT
ACTCTTTTGGGTTTCCAGTTGATCTTGGGGCATCTTGGCTTCATGGTGTTTGTGAAGAAA
ATCCCTTGGCACCGATCATTGGAAGACTTGGGCTTCCACTGTACCGCACCAGTGGAGATG
ACTCGGTCCTTTTTGACCATGATCTCGAGAGTTATGCACTTTATGACACTAATGGCTCTC
AAGTCCCACAAGAGTTTGTAGAAGAGATAGGAAAAGTGTTTGAGGCTATACTGGAAGAGA
CTGGCAAATTAAGGGAAGAAATGAAGGAAGATATTTCTATAGCTAAGGCCATTGCAATTG
TTTTGGAGAGAAATCCACACTTGAGGCGAGAAGGGATTGCACATGATGTTCTCCAGTGGT
ATTTGTGCCGCATGGAGGGTTGGTTTGCTACTGATGCAGATGCCATCTCGCTCCAATGTT
GGGATCAGGAAGTTCTTCTTCCTGGTGGACATGGTCTCATGGTTCGTGGATATCGTCCAG
TTATAAATACGTTGGCAAAAGGTCTAGATATACGCCTTGGTCACAGGGTTGTTGAAATTG
TTCGGCACTGGAATAGAGTAGAGGTTACTGTAAGCAATGGTAAAACATTTGTTGCGGATG
CTGCAGTCATCACCGTTCCGTTGGGTGTTCTTAAATCAAACACCATTAAGTTTGAGCCGA
GGCTCCCGGAGTGGAAGGAGGAAGCAATAAGAGAACTGTCAGTTGGAGTCGAAAACAAAA
TAGTTCTCCACTTCAGTGAGGTTTTCTGGCCTAACGTGGAGTTCCTTGGAGTAGTTTCAT
CCACCACATATGGCTGCAGCTATTTCCTCAACCTTCACAAGGCAACAGGGCATGCTGTTC
TTGTTTACATGCCTGCAGGCCGGCTTGCTTGTGACATTGAAAAGATGTCGGATGAGGCCG
CTGCTCAATTTGCCTTTTCCCAGTTGAAGAAGATCCTCCCTAATGCAGCTGAGCCGCTTA
ACTACCTGGTGTCACACTGGGGCTCAGACGAGAACACCCTTGGCTCCTACACCTTTGACG
GGGTGGGCAAGCCGCGCGACCTGTATGAGAAGCTCCGCATCCCCGTCGACAACCTATTCT
TTGCGGGGGAGGCGACGAGCGTCCAGTACACGGGCACGGTGCATGGCGCCTTCTCCACGG
GGGAGATGGCGGCCGAGGAGTGCAGGATGAGGGTCCTGGAGAAGTTCAGGGAGCTGGACA
TGCTGGAGATGTGCCACCCGATGGCCGAGCAAACGGCCACCGTCTCCGTCCCGCTGCTCA
TCTCCCGGCTGTAAACAGTCGTGCCCCCTTATAAACTATCTATTGTCGCGGCAGGTTCGC
CGGTGTTCATTCCAGTGATTGCTCGAGGAAGGCAGCGTGGGAGCAATCTATCCTTGCTCT
TCCTCGTGGCATGAGGCGTGTGGTCGTGTGATCCTGTGCTTTGCTGAATAAACTTACTGT
CGGGTAATAAAAAGTTGTGGGTGTCGGTATGTATACTGTCAGCGTGATGTGGGGGCTTGT
GCTTGGTAAGGCGCTATGAGCTACGGCCTACGAGACCAATCTTTGTAGGGCAGAGTTGGT
GGTGTAGTATGTGTGATGAAACATTGTAATTTAACTGCATTGGCATTCTTAATATTGGTG
ATGAATGGCAGGTTATCTGTGAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_16775 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os04g53190.2	485	protein\|CPuORF12 - conserved peptide uORF-containing transcript, expressed
Brachypodium v1_2	Bradi5g22220.2	484
Arabidopsis v10	AT2G43020.1	490	\| Symbols: ATPAO2, PAO2 \| polyamine oxidase 2 \| chr2:17891945-17894440 FORWARD LENGTH=490