- Probe CUST_41167_PI390587928
- Source Contig U35_44128
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_41167_PI390587928 | Hv_44K_v2 | TATGGCGCCCTTGGGACAATCTATTTGATTGCAGGGTTTTGTTCCGAAGCAAAGATATCC | 48 | GeneList: midnightblue MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.694 | 0.519 | 0.626 | 1.138 | 1.506 | 1.906 |
Raw | 177.635 | 199.186 | 225.382 | 625.723 | 289.736 | 416.051 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
Harvest21 | ABC41629 | 255 | 3e-25 | 49 - 108 | 100 | 60 / 60 | minus | |
Harvest35 | U35_44128 | 255 | 3e-25 | 49 - 108 | 100 | 60 / 60 | minus |
Contig Sequence (255 bp)
>U35_44128 255 Hv_44K_v2 CAGCTTGGGCCTGGGTGTGCAGAATAGGACGAACGAACCGGCCTCCGCGGATATCTTTGC TTCGGAACAAAACCCTGCAATCAAATAGATTGTCCCAAGGGCGCCATATTCTAGGAGCCC AAGTTATGCTATTGAAAATTCGTTCCTCTAGCAGTTCCGGTTTGAGCATGGGCGTTCCCT TTTTCAAACTCCACTTCTTTTCATATAGCAATCCCTGATCAAAGAGAGAACAATATCCAT TTCAAAACATTTATA
Homology of Contig U35_44128 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |