barSeed - Barley Seed Development Database

Probe CUST_41165_PI390587928

Source Contig U35_20170

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41165_PI390587928	Hv_44K_v2	AGAACACTCATCGTCGTCACATTATGCATCAATAAGTCTCACATCCAATGTTTTTAGACA	1275	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.595	1.338	1.078	0.903	0.293	0.276
Raw	544.429	718.441	501.590	676.816	75.567	78.529

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC12360	1335	3e-25	1276 - 1335	100	60 / 60	plus	ABC12360
Harvest35	U35_20170	1335	3e-25	1276 - 1335	100	60 / 60	plus

Contig Sequence (1335 bp)

>U35_20170 1335 Hv_44K_v2
CTCCGCCACCTGCCGGTCTACGAGGAAACATACATGAAGTGAAGAGTGATAATTAGCGGT
CGTCATACTTTTTATGCCGTCAGTGCTTAAATTCACGGCTTAATGGTTGAAGAAATTGTA
GTGAACAAATTTTGGCAGCAGCATCGACATCTACTCAAGAAAATTTTTAGTCAAATAATC
TGTTGTTTCGGTGTCCTGTTTGATGGCAGTACTGTGAATCCATATGATTGATCTTGCAGC
GAAAAATATATCATGCTTTGTTAACCAAGGCAGTGGAGTGACCAACTAGCTAATATATTT
TCTGTAGAGCCTGAAATCAAGAGGAGTGCGGTTTCCTGGACGCGACAATGAGAGCTTGGC
CCCCATATTTACTCCACCACGCTCAGTTGCTGAAGCTGAAGCTGGTGCAAACTTCACGCA
ACAGACCTTTCAAGATGTGCATATGCATACATATACTGCCGAAGAAACAAAGGAAGCTTT
TGATGTTGCGCGTAATAGCATAGAGCTTCTTTCAACTGTTCTTTCATCTTCCCCTCAGCA
GGATGCTTTGCAGGATGACTTGACGACCACCCTTGTGCAACAATGCTACCAATCCCAACA
CACCATCCAGAGATTCATCGAGACGGCTGGGGACAACGAGGCCATGCTCTTCGAGGCCCT
GACCGTGAACGACGAGATCCAGAAAGTGCTATCCAGATACGAAGAGATGAAGAAACCCGT
GGCGCCAGCGCACGCGGAGCAAGAGCCGTTGGCCATACCGATCCCCGCAGAAGCAGAACA
TGAGGACCCCACCGGCGCCGGGAGCGAAGAGGCCCTGGTCAGAAAACCGGCCGGTACTCG
AGCAAAGCCTGGGGAAGACGAAGGTGTGCTCGATGACCTCGACGAGATGATATTCGGCAA
GAAGGGAGGGGGCAGCTCCTCCCAGGAGGATGTGGATGGGGCTCAAAAGCAGGACACGAA
GAAAGATGACCTAATTAACCTCTGAACACCGTCCCTGCCAGTTCCTGGGATGAGAAGGCA
GTTGCACCTGCAAGTCTTATACTACTGCACGATGGCGTCTGAATGTATTTCATCTGGTAG
AGGATTGGACATTCATTAGGGTTCAGGTCGCTCATCTACTTATTTGCCGCACTCGGTTGA
TCATCGGTAGCTCAGTAGTTGTGCTCCGCTGTTTGTCGCGTTGATCAGTTCACTTGTCAT
CATGTTCTGGTTTCCTGGATGCATCTCAAGCAATCGATGTACCACCAATACATGCATCTT
TTTAGAAAGTTGTGAAGAACACTCATCGTCGTCACATTATGCATCAATAAGTCTCACATC
CAATGTTTTTAGACA

Homology of Contig U35_20170 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g46962.3	393	3e-105	protein\|VHS and GAT domain containing protein, expressed
Brachypodium v1_2	Bradi5g01350.1	393	5e-114
Arabidopsis v10	AT5G16880.1	407	5e-69	Target of Myb protein 1 \| chr5:5549658-5551274 FORWARD LENGTH=407