barSeed - Barley Seed Development Database

Probe CUST_41159_PI390587928

Source Contig U35_20176

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41159_PI390587928	Hv_44K_v2	TCCAGAAGATACTCACAGATCTCGGGGACAAGACAGCCATTGTATTCTGCAACACAAAGA	1764	GeneList: darkorange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.998	0.983	1.664	1.701	0.689	0.521
Raw	389.222	580.246	885.785	1427.081	206.955	169.870

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369576	2482	2e-24	1734 - 1793	100	60 / 60	plus	ABC16451 ABC37642
MLOC	MLOC_78825.6	3950	2e-24	2884 - 2943	100	60 / 60	minus	ABC16451 ABC37642
MLOC	MLOC_78825.13	2057	2e-24	987 - 1046	100	60 / 60	minus	ABC16451 ABC37642
MLOC	MLOC_78825.5	2283	2e-24	1211 - 1270	100	60 / 60	minus	ABC16451 ABC37642
MLOC	MLOC_78825.2	1978	2e-24	906 - 965	100	60 / 60	minus	ABC16451 ABC37642
MLOC	MLOC_78825.8	1713	2e-24	642 - 701	100	60 / 60	minus	ABC16451 ABC37642
MLOC	MLOC_78825.4	2134	2e-24	1078 - 1137	100	60 / 60	minus	ABC16451 ABC37642
MLOC	MLOC_78825.1	2296	2e-24	1240 - 1299	100	60 / 60	minus	ABC16451 ABC37642
MLOC	MLOC_78825.14	1414	2e-24	427 - 486	100	60 / 60	minus	ABC16451
MLOC	MLOC_78825.11	2830	2e-24	1764 - 1823	100	60 / 60	minus	ABC16451 ABC37642
MLOC	MLOC_78825.12	2901	2e-24	1835 - 1894	100	60 / 60	minus	ABC16451 ABC37642
MLOC	MLOC_78825.3	2067	2e-24	995 - 1054	100	60 / 60	minus	ABC16451 ABC37642
MLOC	MLOC_78825.9	1814	2e-24	747 - 806	100	60 / 60	minus	ABC16451 ABC37642
MLOC	MLOC_78825.10	1725	2e-24	658 - 717	100	60 / 60	minus	ABC16451 ABC37642
MLOC	MLOC_78825.7	3687	2e-24	2621 - 2680	100	60 / 60	minus	ABC16451 ABC37642
JLOC1	JLOC1_52529.6	1948	8e-25	1014 - 1073	100	60 / 60	plus
JLOC1	JLOC1_52529.5	1836	8e-25	1014 - 1073	100	60 / 60	plus
JLOC1	JLOC1_52529.4	1844	8e-25	1014 - 1073	100	60 / 60	plus
JLOC1	JLOC1_52529.3	1755	8e-25	1014 - 1073	100	60 / 60	plus
JLOC1	JLOC1_52529.2	1946	8e-25	1014 - 1073	100	60 / 60	plus
JLOC1	JLOC1_52529.1	2035	8e-25	1014 - 1073	100	60 / 60	plus
Harvest21	ABC12386	1826	3e-25	1765 - 1824	100	60 / 60	plus
Harvest35	U35_20176	1827	3e-25	1765 - 1824	100	60 / 60	plus

Contig Sequence (1827 bp)

>U35_20176 1827 Hv_44K_v2
CGGCAAACCCTCCCCCGCTGCACGCATCGGCACGGGCTTCCTCTCGCTCCGCCGCCGCCG
CCGCCGCCGCCGCCATGAAGCGATCCTTCGACGCCATGGAGGCGAAGCCGGTGTTCCTCT
CCAAGGAGGAGCGCCAGCGCCTCGCGCTCGAGCGCCGCCAGGCGGCCGTCGCCGACCAGC
GCCGCTCCGCGCTCGACGTCCTCCAGTCGCTCCCCCGCCCCCCGCCGCCGCCTCCCCCGT
CCAGCGCCCCCCGGGACTCCTCCTCCTCGTCCCACCGCGACCCCTCCGACCGGGACAGGG
GCGACAGGGACCGGGACCGGGACAGGGACCGCGACCGCCGCCGCGACGACGACTCCCGCC
GGGACCGAGATCGGGATCGCGACCGGGACCGCGACCGCGACCGCGACGAGCCCTCCCGCC
GGGACCGGGACCGGGACCGCGACCGGGACCGGGAGCACCGGGACAGGGAGCGCGGGGAGC
GGGACAAGGACCGGGAGAAGGACCGGCTGGAGAAGATGGCGGAGCGGGAGCGGGAGAAGG
AGCTCGAGGCCATCAAGGAGCAGTACCTGGGGTCCAAGAAGCCCAAGAAGCGGGTCATCA
AGCCGTCGGAGAAGTTCCGCTTCTCCTTCGACTGGGAGAACACGGAGGACACCAGCCGCG
ACATGAACATGCTCTACCAGGCGCCGCACGAGGCCCGCCTGCTCTACGGCCGCGGCTTCC
TCGCCGGCATCGACCGGCGCGAGCAGAAGAAGGCGGCCGCCGTGTTTGAGAAGGAGACAC
GCGCCGAGCAGCGCCGCAAGTTCGGCGTGGAGGACCGGCCCGAGGATGATGTGGCTGATA
AGAAGAAGGCCGCCGCCGCGGAGATGTATGATGCCTTTGACATGCGTGTGGACAGGCACT
GGTCCGAGAAGGGCATCGAGGAGATGACCGAGCGGGATTGGCGTATTTTCCGTGAGGACT
TCAATATCTCCTACAAGGGATCTCGCATACCCCGGCCGATGCGCAACTGGCCCGAGAGCA
AGCTTGGGACTGAGCTGCTTCGTGCTATTGAGAAGGTTGGGTACAAGAAACCGTCACCCA
TCCAGATGGCCGCCATTCCGCTTGGTCTCCAGCAGCGTGATGTCATTGGTATTGCTGAGA
CAGGTTCAGGCAAGACTGCAGCTTTTGTGCTTCCTATGCTGTCGTACATTACTCGCCTGC
CGCCTATAAGCGAGGACAATGAGGCCGAGGGTCCTTATGCTGTTGTCATGGCACCTACTC
GTGAGCTTGCTCAACAGATTGAGGAAGAGACGGTCAAGTTTGCAACCTATCTAGGCATTA
AAGTCGTTTCCATTGTTGGTGGTCAGTCGATTGAGGAGCAAGGTTTCAAGATTAGGCAGG
GCTGCGAAGTTGTAATTGCAACGCCTGGTCGGCTTCTTGATTGTCTGGAGAGAAGGTATG
CTGTGCTCAACCAGTGCAACTATGTTGTACTTGACGAGGCTGATAGGATGATTGATATGG
GATTTGAACCACAGGTTGTTGGTGTCCTTGATGCGATGCCATCAAGTAACCTGAAACCTG
AGAATGAGGAAGAGGAACTGGATGAGAAGAGGATTTACAGGACAACTTATATGTTCAGTG
CCACCATGCCACCTGCTGTTGAGCGCCTTGCTAGGAAGTACCTCCGGAACCCAGTTGTCG
TCACAATTGGTACAGCTGGCAAGGCCACAGATTTGATAACCCAAAACGTGATCATGGTGA
AGGAGTCAGAGAAGATGTCACGGCTCCAGAAGATACTCACAGATCTCGGGGACAAGACAG
CCATTGTATTCTGCAACACAAAGAAAT

Homology of Contig U35_20176 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g50090.1	737	protein\|transposon protein, putative, CACTA, En/Spm sub-class, expressed
Brachypodium v1_2	Bradi1g11180.1	735
Arabidopsis v10	AT2G33730.1	733	P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr2:14265679-14267880 REVERSE LENGTH=733