barSeed - Barley Seed Development Database

Probe CUST_41140_PI390587928

Source Contig U35_20184

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41140_PI390587928	Hv_44K_v2	AGTCCAGCTTTTGCTTTGTGCAATCAGTTCAACTTTTACCTTCTAACCCCTGCTCTTTAT	1915	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.912	2.426	1.223	0.716	0.203	0.254
Raw	263.259	524.628	231.010	216.809	21.860	28.957

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13715.2	1422	2e-24	1352 - 1411	100	60 / 60	plus	ABC12502 ABC47561
JLOC1	JLOC1_9309.1	1738	8e-25	1352 - 1411	100	60 / 60	plus
Harvest35	U35_20184	2006	3e-25	1916 - 1975	100	60 / 60	plus

Contig Sequence (2006 bp)

>U35_20184 2006 Hv_44K_v2
ACGCCGGGCCCGAGCCGAAGCAAGCAGAGCGAGCCACCAAATCTAGCGAGGGGCCGACGA
CAGACAGCGGCGGAGAGCACACCCAGGCCAGCAGCTTCCCCTCCCCTCCCCTCCTCGTCT
CGCCATTTCCGCGGAATCGGAGCAGGGCAGGCCTTGTTTGGGGTCCTCTTGAATGGCTGT
TGCTGTAAAAACAAGCGGCGGTTTTTGTAACGCACAGCAACAATGGCTGCATTCAACAGG
AGATCTATTTTTATATGGATATTCTCATTCAGATGCCAAAGAATGCAAAAGCAAGAAGAC
AAAAAGGCCTGCTTCACTGCGTGTTAAAGCTACTTCCACAAAAGTGGAATTAGATTTTAA
TGATCCATCTTGGAAGCAGAAGTTTCAGGAAGACTGGGATAATCGTTTTAATCTGCCACG
AATTACAGATATATATGACTTGAAACCAAGGCCAACTACATTCTCACTTACGAAACAGAG
AACTCCTACTGGTGATGAAGATAGTACACCTAAGGATATGTGGAATGGTTACGTGAGCAA
TGATGACCGAGCGCTTATGAAGGTCATAAAGTATTCCTCGCCAACTTCTGCTGGAGCAGA
GTGCATTGATCCTGACTGTAGCTGGGTGGAGCAATGGGTGCATCGTGCAGGGCCTCGTAA
GGATATATACTATGAGCCAAATGAAGTAAAAGCTGCTATAGTTACTTGTGGAGGCCTCTG
CCCTGGTTTGAATGATGTCATCAGACAGGTTGTATTCACCCTGGAGACATATGGGGTTAA
GAATATTGTCGGGATTCCATTTGGTTTTCGTGGATTTTATGAAAAAGGTCTAAAAGAAAT
GCCACTTTCACGTAATCTAGTGGAGAATATTAATCTTGCTGGTGGAAGTTTTCTTGGAGT
CTCCCGTGGAGGACCTAAAACTAGTGAAATTGTAGATAGTATACAGGCCAGAAGAATTGA
TATGCTTTTTGTACTTGGTGGAAATGGTACCCATGCAGGAGCAAATGCTATCCATGATGA
GTGCCGTAAAAGAAAGCTCAAGGTTTCCGTTGTAGCAGTTCCAAAGACCATTGACAATGA
TATACCTTTAATGGACAAAACATTTGGTTTCGATACCGCGGTGGAAGAAGCTCAACGGGC
CATTAACTCTGCCTATATAGAGGCACGCAGTGCATACCATGGTATCGGCTTGGTCAAATT
AATGGGAAGAAGCAGTGGTTTCATTGCAATGCATGCTTCTCTTTCAAGTGGACAGGTTGA
TGTCTGCTTAATACCAGAGGTCCCATTCGCGCTAGATGGAGAATATGGTGTTTTACAGCA
CCTCGAGCAGTTAATAAAGAACAAGGGATTCTGTGTGGTTTGTGTTGCTGAAGCTGCAGG
ACAAGAGTTACTGCAAAACTCAGGCGCAACTGATGCATCAGGAAATGCAATACTTAGCGA
CATTGGTGTTCACATGCAACAAAAGATCAAGACGCATTTCAAGGGCATCGGTGTCCATGC
GGATATAAAATACATCGACCCGACGTACATGGTCCGGGCTTGTCGTGCCAATGCATCCGA
TGCGATCCTGTGCACTGTGCTTGGACAAAATGCCGTCCACGGAGCGTTTGCTGGGTTCAG
CGGCATCACTTCCTGCATCTGCAACACTCACTATGTGTACCTTCCGGTTACGCAAGTCAT
CACGGCGCCGAAGCGTGTGAACCACAAGGGCAGGATGTGGCACCGTTGCCTCACTTCCAC
AGGCCAGCCGGACTTCCGCTGACCACCTGTTGCTACAGAATTTGAACTATAAGTGCTACG
GAATTTCGGCGTTAAGTTTTTGCCCTGTGCAATCAGTTCAGTTTTTCTCTTTGTGTAATC
AGTTAAGTTGTTCAGTGTTAAGTACTAGAGAATCTGAGTGCCGTGGTACATGATTAGTCC
AGCTTTTGCTTTGTGCAATCAGTTCAACTTTTACCTTCTAACCCCTGCTCTTTATTTTTT
CCTTCCTCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_20184 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os08g34050.1	536	protein\|phosphofructokinase, putative, expressed
Brachypodium v1_2	Bradi3g37020.1	531
Arabidopsis v10	AT2G22480.1	537	\| Symbols: PFK5 \| phosphofructokinase 5 \| chr2:9545670-9548414 FORWARD LENGTH=537