barSeed - Barley Seed Development Database

Probe CUST_41138_PI390587928

Source Contig U35_20186

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41138_PI390587928	Hv_44K_v2	CAATAAAGAGTCCGATAATTCAAAATAATTTGCGGCCCGGATATTGCTTTCTGCAAAAAA	761	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.111	4.824	1.224	0.701	1.045	0.919
Raw	7.786	48.214	10.837	9.396	4.665	4.449

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44690.1	977	3e-22	57 - 112	100	56 / 56	minus	ABC12082 ABC43469
JLOC1	JLOC1_28979.1	903	1e-22	767 - 822	100	56 / 56	plus
Harvest21	ABC12082	832	3e-25	762 - 821	100	60 / 60	plus	ABC12082
Harvest35	U35_20186	832	3e-25	762 - 821	100	60 / 60	plus

Contig Sequence (832 bp)

>U35_20186 832 Hv_44K_v2
GCACGCACAAACACACATCAAACATCATGGCGGGTACCGTTGACGTCACGACGGAGCCGG
AGCTGCTGCTGGAGCGCAGCCGGGCGATCACCGTGCATGGGGGCGACAAAGCGGGCCGCG
CCGTCGTCAGGATCGTCGGCAAGTACTTCCCCGCGCGCGCGCTGGGCGGGCTGGCGGAGG
AGGCGCTGAAGGCGCACCTGCGGAAGCGGGTGCTCCCGGAGGTCGGGGAGCGGGAGTTCG
TGGTCGTGTACATGCACTCCCTCGTCGACCGCGGCGACAACTTCCCGGGCCTGGGCGCCA
TCCGCGCGGCGTACGAGTGCCTGCCGGCCGTGGCCAAGGAGAGGCTGCGCGCCGTCTACT
TCGTGCACCCCGGCATCCAGGCCCGGCTCTTCTTCGCGACCTTCGGCCGGTTCCTCTTCA
GCTCCGGGTTGTACGAGAAGCTGAGGTACATGAGCAGGCTCGAGTACCTGTGGGCGCACA
TGGACAAGGGGGAGCTCGAGGTCCCGGAGTGCGCACGCCAGCACGACGACGAGCTCGAGC
GCCGCCCGCTCATGGACTACGGAATCGAGGCCGCCGACCGCTGTTCCGTGTTCGACGCCG
CGTCCATGGACACACCGGCGTCCCTACGCTCGCTGCGGTGCTCCTAGCGTCCGGCACCAA
GTGATAGCCCCCAGCTGCATCCGGTTGTAGATTAGCAGGCCTCTTGATGTTTGTTTGTAA
TCTGTACATATTAGTAATAGTGGAAGTAATACTGTAAAATACAATAAAGAGTCCGATAAT
TCAAAATAATTTGCGGCCCGGATATTGCTTTCTGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_20186 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g44820.3	212	2e-108	protein\|rho-GTPase-activating protein-related, putative, expressed
Brachypodium v1_2	Bradi3g51230.1	212	2e-110
Arabidopsis v10	AT4G35750.1	202	7e-64	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein \| chr4:16940865-16941674 REVERSE LENGTH=202