barSeed - Barley Seed Development Database

Probe CUST_41130_PI390587928

Source Contig U35_32168

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41130_PI390587928	Hv_44K_v2	GCAGTCCAGGGCCGACCCCAACCAGGACACCGGCTTCGCCGTGCACAACTGCACCGTGGA	351	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55820.4	2211	7e-23	722 - 781	98	59 / 60	minus	None
MLOC	MLOC_55820.3	5267	7e-23	3666 - 3725	98	59 / 60	minus	ABC10314
JLOC1	JLOC1_36045.1	2298	4e-23	1467 - 1526	98	59 / 60	plus
JLOC1	JLOC1_36044.2	2463	4e-23	1930 - 1989	98	59 / 60	minus
JLOC1	JLOC1_36044.1	2580	4e-23	2047 - 2106	98	59 / 60	minus
Harvest35	U35_32168	451	3e-25	352 - 411	100	60 / 60	plus

Contig Sequence (451 bp)

>U35_32168 451 Hv_44K_v2
CATCACCGGCAGCCGCAGCGCCGCCGACGGCTGGACCACCTTCCGCACCGCCACCGTCGG
GGTGTCCGGCGAGGGGTTCCTGGCGCGGGACATGGCGTTCCGCAACACGGCGGGCGCGGC
GAGGGGGCAGGCGGTGGCGCTGCGGGTGAACGCGGACATGGCGGCGGCGTACCGCTGCGC
CGTCGACGGCCACCAGGACGCGCTCTACGCGCACTCCTTCCGGCAGTTCTACCGCGAGTG
CACCCTGTCCGGCACGGTGGACCTCGCCTTCGGCAACGCCGCCGCGGTGCTCCAGGCGTG
CGCGCTCGTCGCCGGCGCGCCGGTCCCGGGCCAGTCCAACGTGCTCACGGCGCAGTCCAG
GGCCGACCCCAACCAGGACACCGGCTTCGCCGTGCACAACTGCACCGTGGAGGCCTCGCC
GGAGCTGCTCGCCGGCGGCGTCAGCACCCGC

Homology of Contig U35_32168 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g09340.1	586	4e-74	protein\|pectinesterase, putative, expressed
Brachypodium v1_2	None
Arabidopsis v10	AT2G26440.1	547	3e-51	Plant invertase/pectin methylesterase inhibitor superfamily \| chr2:11247407-11249407 FORWARD LENGTH=547