barSeed - Barley Seed Development Database

Probe CUST_41129_PI390587928

Source Contig U35_32169

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41129_PI390587928	Hv_44K_v2	GGTCACCGGCGACCCCGCCCAGTGGCTCCAGGCCTGCTCCGATCTCGAGAAACCTCAGTC	420	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4943.2	4241	3e-21	3692 - 3751	97	59 / 61	minus	ABC15350
MLOC	MLOC_4943.1	4251	3e-21	3693 - 3752	97	59 / 61	minus	ABC15350
JLOC1	JLOC1_3146.1	4336	2e-21	500 - 559	97	59 / 61	plus
Harvest35	U35_32169	480	3e-25	421 - 480	100	60 / 60	plus

Contig Sequence (480 bp)

>U35_32169 480 Hv_44K_v2
AACGCACGGAACAGCCAGCCATCACAGATCCAAGCTCGCGTCCGCCCACCGACGACTACC
GCCGCCCGAGGCTCCGGGACCGAAGTCCTTCCGCCCGGCAGCCTCGCGGCGACCGGGAGG
TGGGGCGGCCATGGAGGACTATCCGGAGGAGCTGCGGACGCCGCCGGTGTCGCTGGTGTC
CATCGTGGGTTGCCCGGAGATGCACGCCACGATCTCGGCGGCGCTCAGCTCCCAGCAGCC
GCCCATGAACACGCTGGCCCTCCCGGACTTCGCCAAGGCCAACATCCTCTCCCGCACCGC
CAAGAGCCGCGACCCGCTCGCGCCGCCGCAGACCGCCACGGGGATCCTCAAGAAGGACTG
GCTCCTCAAGCACCGGACGCGGGTGCCCGCCGCCGTCGCCGCCATGTTCCGGGCCGATCA
GGTCACCGGCGACCCCGCCCAGTGGCTCCAGGCCTGCTCCGATCTCGAGAAACCTCAGTC

Homology of Contig U35_32169 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g48380.2	704	2e-62	protein\|expressed protein
Brachypodium v1_2	Bradi3g53280.1	1178	2e-63
Arabidopsis v10	None