barSeed - Barley Seed Development Database

Probe CUST_41123_PI390587928

Source Contig U35_20191

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41123_PI390587928	Hv_44K_v2	CAGTGTGAGTATCATATAATTAGTGCCAGAAACTTCCAGCAACAATGTATCGTTTTGCTA	1202	GeneList: yellowgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.500	2.415	1.785	1.093	0.485	0.700
Raw	40.541	300.518	185.161	188.488	26.701	44.654

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371077	2282	2e-24	2197 - 2256	100	60 / 60	plus	ABC15142
MLOC	MLOC_59013.5	1651	2e-24	1520 - 1579	100	60 / 60	plus	ABC15142
MLOC	MLOC_59013.2	3674	2e-24	3542 - 3601	100	60 / 60	plus	ABC15142
MLOC	MLOC_59013.6	1660	2e-24	1531 - 1590	100	60 / 60	plus	ABC15142
MLOC	MLOC_59013.4	2014	2e-24	1883 - 1942	100	60 / 60	plus	ABC15142
MLOC	MLOC_59013.1	3792	2e-24	3660 - 3719	100	60 / 60	plus	ABC15142
MLOC	MLOC_59013.3	3634	2e-24	3501 - 3560	100	60 / 60	plus	ABC15142
JLOC1	JLOC1_38376.1	2057	8e-25	21 - 80	100	60 / 60	minus
JLOC1	JLOC1_38375.1	2080	8e-25	1951 - 2010	100	60 / 60	plus
Harvest21	ABC15142	1334	3e-25	73 - 132	100	60 / 60	minus	ABC15142
Harvest21	ABC40361	219	1e-23	68 - 127	98	59 / 60	minus
Harvest35	U35_20191	1337	3e-25	1203 - 1262	100	60 / 60	plus

Contig Sequence (1337 bp)

>U35_20191 1337 Hv_44K_v2
GGCCCCCCCTTCTTACGCTTCCCTTTTTTTGCGGCCGTACATTAGACCGCTGGGACGTGG
ACGTTCAAGAGATATGAGTGCCAGTCCATAGATTTGGGGTCGAAGTTGAAGAGGCTACCA
TCTTTGCCGTCCATCTTTGCTTCCTTCCTCAACCTTGTTAAGTTTGTGTCATCAAAGCAT
CCTTTGAAGAAGGCATATGGTGCATACAACTTGACCAAGAGCATTAAGAAGGTGAAAGCC
CTTACCTCCTACCTCCCTCACATCCTCGCCGTGGCCAAGAAAGTCAAGGAGCAGAACAGG
ACGCTCAAGATCTACATGAACGAAGGTGAGTCGTGGTTTGCCATTGATCTCCACCACCCA
TCAACCTTCAGCACCCTCGCCATGGATCACAAGCTCAAGCAGTCAGTCATGGATGATCTC
GAGAGGTTTGTCAAAAGAAAGGAATACTACAAAAAGATCGGCAAGGCGTGGAAACGAGGG
TACCTGCTGTATGGCCCACCTGGGACTGGCAAGTCAAGCATGATTGCAGCAATGGCCAAT
TACCTCAAATTTGATGTATATGATCTTGAGCTCACTGAGGTCAACTGGAACTCAACACTT
CGGAGGTTGCTCATTGGGATGACCAACCGGTCAATTCTTGTCATTGAGGACATTGACTGC
ACTGTCGAGCTGCAACAGCGGGAGGAAGGTCAGGAGGGCACCAAATCCAACCCTTCAGAG
GACAAGGTGACACTATCCGGGCTACTCAATTTCGTTGACGGGCTTTGGTCAACAAGTGGA
GAGGAGAGGATAATTATCTTCACAACAAACTACAAAGAAAGGCTCGACCCTGCGCTTCTG
CGCCCTGGCAGGATGGACATGCACATTCACATGGGGTACTGCTGCCCAGAGTCGTTTCGA
ATCTTGGCCTCCAACTACCACTCTATAGATCACCATGCCACATACCAGGAGATAGAAGAA
ATGATCAAAGAGGTCATGGTGACTCCAGCAGAGGTCGCGGAGGTGCTCATGAGGAATGAA
GAGACAGACATCGCACTTGAAGGTCTTATCCAGTTCCTCAAGAGAAAGAAAGATGGCGCT
GGCAAAATGGAAAATGTGGACCAGGTGGCGAAGGAGGAAGAACAAGAGAAAGAGATGATG
ACGAAAAGTGATGTCCTAGACAATGAAGATCAGCAAGATGGGAGCAAAGAATGATGCGTA
TACAGTGTGAGTATCATATAATTAGTGCCAGAAACTTCCAGCAACAATGTATCGTTTTGC
TATAATAAGAGATCAATTTTTTGGTAACAATATAAAAAAAAAAAAAAATTGTGAACAGTT
AAAAAAAAAAAAAAAAA

Homology of Contig U35_20191 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g42030.1	487	0.0	protein\|mitochondrial chaperone BCS1, putative, expressed
Brachypodium v1_2	Bradi2g42940.1	488	0.0
Arabidopsis v10	AT3G50930.1	576	1e-117	\| Symbols: BCS1 \| cytochrome BC1 synthesis \| chr3:18929817-18931547 FORWARD LENGTH=576