barSeed - Barley Seed Development Database

Probe CUST_41121_PI390587928

Source Contig U35_22744

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41121_PI390587928	Hv_44K_v2	GGATTTTCTTTAGTTTGGAACTTCCCAAGTTGAGATGTTGAATTGGTTGGATGGAAAAAA	964	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.268	1.727	1.253	0.773	0.264	0.323
Raw	658.852	1413.871	885.577	867.829	103.015	138.319

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_42821.3	1782	9e-22	1724 - 1778	100	55 / 55	plus	ABC16224
JLOC1	JLOC1_27680.3	2563	5e-22	2267 - 2321	100	55 / 55	plus
JLOC1	JLOC1_27680.2	1921	5e-22	1625 - 1679	100	55 / 55	plus
JLOC1	JLOC1_27680.1	1797	5e-22	1501 - 1555	100	55 / 55	plus
Harvest21	ABC16224	1035	3e-25	965 - 1024	100	60 / 60	plus	ABC16224
Harvest35	U35_22744	1035	3e-25	965 - 1024	100	60 / 60	plus

Contig Sequence (1035 bp)

>U35_22744 1035 Hv_44K_v2
TGATGGCAAGTTTGAATATGGTTACATTGTAACTGTTGTTATGGGATCAAAATCCACAAA
AGCAATCCTTTATAATTACAGTGAGGAACCTGCTCTTACAACTCTGGCACCTACTATGCC
CGTAAACAACACTGGTTCGAAGGGTGGACATAGGCGGAGGCAACGCAGGAAGAAACTAAG
TACAACAGACCCCAGACATCCCAAACCGAACAGGAGCGGCTATAATTTCTTTTTCCAGGA
CCAGCACAGAAAGCTAAAGCCAGAGTATCCTAGCCAGGATAGGCTGATCAGTAAAATGAT
TGGTGAACGGTGGAACAATCTAAGCCCTGAAGACAAAGCTGTGTACCAAGAAAGAGGTGT
ACAGGACAAGGAGAGATACCAGTCTCAGTTGGCTGCTTATAGAGAAGAACTGAGAACAGG
CCAGCCTATCAGCAATTCTATGCCTATTATCGGCAATGATGCACCTATCCAGCAGACATT
TCCCCAGACAGAAGTAACTATTGATGAAGTGGACTCCAAGGTCAGTAAAGGAGATATGTT
GCTGTCCAATCAAAGGTACAACAACAGCGACGAAGGTGTTGATTCAGGTGGGAAACTTGT
TGAAGATGAAGAGTTCAACACTGATACATCTCCTGAGCCTAGCATGGATACCACTGATTC
TCCTGGGCCGCTTGATCCTTCTGCTGATGGTGACCGATTTGAACTTCGCAGGAGGGAGAA
CCCCAACAAAAATGAGAAACAGAGCACTGCACCTAAATAATGATTGAAAATGACTTAATG
GTGCATTCTTCTGGTACAAGATTAAAAGTAATAAGCTGAAGTGAGTGGTAGATTATGCCT
CCTGCCTTGGTTGTAGGATCAGGTCGATGTATCATTTTTATTCCTTTTATATATCAGCAT
TGTTTTAGAAACTGCAACGCGCTGATTTATGTGGGTAATGCTCTATTAGCACATGAAATG
CTGTGGATTTTCTTTAGTTTGGAACTTCCCAAGTTGAGATGTTGAATTGGTTGGATGGAA
AAAAAAAAAAAAAAA

Homology of Contig U35_22744 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g27060.2	468	1e-111	protein\|high mobility group, putative, expressed
Brachypodium v1_2	Bradi3g43310.1	444	8e-133
Arabidopsis v10	None