barSeed - Barley Seed Development Database

Probe CUST_41119_PI390587928

Source Contig U35_22747

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41119_PI390587928	Hv_44K_v2	GGGGAAGTATTACTCCCTGAATGTCCCCGTTGGATGACGGCATCGACGACGAGAGCTATC	768	GeneList: orange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.694	0.759	1.774	2.235	0.739	0.981
Raw	21.069	36.113	74.237	146.664	17.630	25.106

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249835.1	2177	3e-22	838 - 896	98	59 / 60	plus	ABC05301
MLOC	MLOC_10109.1	1177	3e-22	501 - 559	98	59 / 60	minus	ABC05301
MLOC	MLOC_10109.2	1143	3e-22	467 - 525	98	59 / 60	minus	ABC05301
JLOC1	JLOC1_6591.1	1275	1e-22	619 - 677	98	59 / 60	plus
Harvest21	ABC17891	828	3e-25	769 - 828	100	60 / 60	plus
Harvest35	U35_22747	828	3e-25	769 - 828	100	60 / 60	plus

Contig Sequence (828 bp)

>U35_22747 828 Hv_44K_v2
GAGATACCGAAACCCACAAACAGAGGCAAGCGCGGAGGAGAGAAGGAGAAGGCGCCTCGT
CCCCTACCCCTAGGCCGATATGGACATCTCGGCCGGCGGCGGCGGCAACTCGCTGCCCAC
CACCGGCGCGGACGGCTCGAAGCGCCGCGTCTGCTACTTCTACGACGCGGAGGTGGGCAA
CTACTACTACGGGCAGGGCCACCCGATGAAGCCGCACCGCATCCGCATGACCCACGCCCT
GCTCGCCCACTACGGCCTCCTCGACGAGATGCAGGTGCTCAAGCCGCACCCCGCCCGCGA
CCGCGACCTCTGCCGCTTCCACGCCGACGACTACGTCTCCTTCCTCCGCTCCGTCACCCC
GGAGACGCAGCAGGACCAGATCCGCGCGCTCAAGCGCTTCAACGTCGGCGAGGACTGCCC
CGTCTTCGACGGCCTCTACAGCTTCTGCCAGACCTACGCCGGCGGCTCCGTCGGGGGCGC
CGTCAAGCTCAACCACGGCCACGACATCGCAATCAACTGGGCCGGCGGCCTCCACCACGC
CAAGAAGTGCGAGGCCTCCGGCTTCTGCTACGTCAACGACATCGTCCTCGCCATCCTCGA
GCTCCTCAAATACCACCAGCGTGTTCTGTATGTCGATATCGATATCCACCATGGGGACGG
CGTGGAGGAGGCGTTTTACACCACGGACAGGGTGATGACGGTCTCATTCCACAAGTTTGG
GGATTACTTCCCAGGGACAGGAGACATTCGTGACGTTGGGCACTCCAAGGGGAAGTATTA
CTCCCTGAATGTCCCCGTTGGATGACGGCATCGACGACGAGAGCTATC

Homology of Contig U35_22747 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g38470.3	460	2e-177	protein\|histone deacetylase 19, putative, expressed
Brachypodium v1_2	Bradi1g37290.1	522	3e-179
Arabidopsis v10	AT4G38130.1	501	2e-153	\| Symbols: HD1, ATHD1, HDA1, RPD3A, HDA19, ATHDA19 \| histone deacetylase 1 \| chr4:17896493-17899057 REVERSE LENGTH=501