barSeed - Barley Seed Development Database

Probe CUST_41118_PI390587928

Source Contig U35_22748

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41118_PI390587928	Hv_44K_v2	TTTGTGTTATCTCAACTCCTAAAGGATCAGAACATTCCATGCAAGTGCAAGTTACTTAAA	502	GeneList: thistle1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	26.827	8.260	1.685	0.338	0.314	0.280
Raw	594.624	284.999	50.845	15.250	2.665	2.629

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC17248	576	3e-25	503 - 562	100	60 / 60	plus	ABC17248
Harvest35	U35_22748	576	3e-25	503 - 562	100	60 / 60	plus

Contig Sequence (576 bp)

>U35_22748 576 Hv_44K_v2
GATTCAATCCAAGGTGTGACAATGGCCTCCAAGATAGCACTAGTAGTCTTGTCTCTACCG
GTGTTAGCATTCTTCCTCTGCATTGGTACTGCAGAAGCTGGCCCGCAGTGCACATACAAG
ATTAATCCTTACTATCATGGTGGGTGCAAGACAGATTATGACAACGACAATTGTCGAATT
GCTTGTACAAGATTTGAGGCACCAAAGTACATGGGTGGCGTATGTTCTGATGAACAATGC
GTCTGCTATACTTGTTAATGATCGTCGGACTCATCCATCACTCGGGGAGATACATCACTT
GTGCCTTGGTGGACACCACCATGGAAAGATTAGAGCTCCTAGGAAGATTGCTTTCTTTTA
TTGTATCAGAATAAATTGGCAATGTGTCTGATTGTGCTTTAGCAAGTATTTATTTCTGAT
GAGTTATGATGAAGAGTTTCCAATCGATTTAAATTGTTCGCCTAATATCTTGTAGGCAAT
AGTACATGTGCGGCAACCGGTTTTTGTGTTATCTCAACTCCTAAAGGATCAGAACATTCC
ATGCAAGTGCAAGTTACTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_22748 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None