barSeed - Barley Seed Development Database

Probe CUST_41106_PI390587928

Source Contig U35_10773

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41106_PI390587928	Hv_44K_v2	TAATTATCTCTGTACATCAAATGACCATGAGTACCTAATCCAATCTTGCATGCATGATGG	371	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57217.2	3339	2e-24	3182 - 3241	100	60 / 60	plus	None
MLOC	MLOC_57217.3	3430	2e-24	99 - 158	100	60 / 60	minus	ABC06258 ABC06261
MLOC	MLOC_57217.1	4866	2e-24	344 - 403	100	60 / 60	minus	ABC06258 ABC06261
JLOC1	JLOC1_37040.1	4724	8e-25	146 - 205	100	60 / 60	minus
JLOC1	JLOC1_37041.2	3280	8e-25	3076 - 3135	100	60 / 60	plus
JLOC1	JLOC1_37041.1	2825	8e-25	2621 - 2680	100	60 / 60	plus
Harvest35	U35_10773	457	3e-25	372 - 431	100	60 / 60	plus

Contig Sequence (457 bp)

>U35_10773 457 Hv_44K_v2
AAAGTATCATTCTGGAAGTCCATGATGCAATCACAAGGGCCGAACGGGTAGCTGCATCAC
TTTCAGGAGTCTGGTCTTCACCAAACAAGAAGCTGCAGCCTTTCACGGATTTCGTGTTGG
AATTATCAAACAAGCTCAAGAGTAGACACATTTCAGGCGTTAGTGAAAAAAAGATACGTG
GGCTGGCGCGTCGTTTGAAGAACATATTGGTGGCGCTGAACGAGTATGATAAGGCTAGAA
ATATTTTGAAGACCTTCCAAATCAGAGAAGCTCTCTAGTTTTTCCCTTGACATAGAACAA
GAATTCCATTTTTGTTTGGAGGCGGCAAGCAGGTTTGATATCCTTTTGGTTCACGGGAAT
GTTGTAATGTCTAATTATCTCTGTACATCAAATGACCATGAGTACCTAATCCAATCTTGC
ATGCATGATGGTGCAATTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_10773 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None